Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1036 GCAGAAGGAGCAATGGACTCGCGAGCTCAGTATAATCCGCGCACCGTGGAAGAGGTTTTTAGGGATTTCAAGGGTCGCCGAGCAGGTCTCATCAAAGCCCTCACCACCGATGTTGAAGAATTCTACAACCAATGTGACCCTGAGAAGGAGAACTTGTGCTTGTATGGCTTTCCTAGCGAGCAGTGGGAAGTAAATTTACCCGCTGAAGAAGTTCCACCAGAGCTTCCCGAGCCTGTGCTGGGCATTAACTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTGGTCGCTGTTCACAGCGATGCGTGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGCCTTTTCAATATGATTAATGAAGTGCCCACAATATTTGAAGTTGTTACTGGTGCAGCCAAGAAACAAGTGAAGGAGAAGTCTTCAGTTTCGAACCATAGTGGCAGCAAATCAAAGTCCAACTCTAAAGCACGTGCTCCGGAACCACAGGGTAGGCAGCAAAAGGCATTGCAAGCAAAAGATGAGGACGATGAACTGGACGAGCAAGAAGACGATGAACACGGGGAAACCTTGTGTGGGGCATGTGGCGAGCATTATGGCACCGATGAATTCTGGATTTGCTGTGACATTTGCGAGAAGTGGTTCCATGGGAAATGCGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAGTACAAGTGCCCATCATGCAGTAATAAGCGAACTCGCCCCTGA 774 0.4845 AEGAMDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINEVPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSNSKARAPEPQGRQQKALQAKDEDDELDEQEDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1036 257 MobiDBLite consensus disorder prediction 149 195 - -
Amo19g1036 257 SMART PHD_3 203 251 IPR001965 -
Amo19g1036 257 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 10 257 - -
Amo19g1036 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
Amo19g1036 257 CDD PHD_AL_plant 203 253 IPR044104 -
Amo19g1036 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Amo19g1036 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 252 IPR013083 -
Amo19g1036 257 SUPERFAMILY FYVE/PHD zinc finger 193 254 IPR011011 -
Amo19g1036 257 Pfam Alfin 15 143 IPR021998 GO:0006355|GO:0042393
Amo19g1036 257 MobiDBLite consensus disorder prediction 154 173 - -
Amo19g1036 257 Pfam PHD-finger 204 253 IPR019787 -
Amo19g1036 257 PANTHER CPG BINDING PROTEIN 10 257 IPR045104 GO:0006355|GO:0042393
Amo19g1036 257 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1036 Amo-Chr19 17974319 17979734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1036 9 256 Alfin-like Transcription Factor Family AT3G42790 76.210 8.45e-128 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Amo19g1036 Alfin 3.3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1036 - - gmx:100170700 466.463