Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1035 ATGGACTCGCGAGCTCAGTATAATCCGCGCACCGTGGAAGAGGTTTTTAGGGATTTCAAGGGTCGCCGAGCAGGTCTCATCAAAGCCCTCACCACCGATGTTGAAGAATTCTACAACCAATGTGACCCTGAGAAGGAGAACTTGTGCTTGTATGGCTTTCCTAGCGAGCAGTGGGAAGTAAATTTACCCGCTGAAGAAGTTCCACCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTGGTCGCTGTTCACAGCGATGCGTGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGCCTTTTCAATATGATTAATGAAGTGCCCACAATATTTGAAGTTGTTACTGGTGCAGCCAAGAAACAAGTGAAGGAGAAGTCTTCAGTTTCGAACCATAGTGGCAGCAAATCAAAGTCCAACTCTAAAGCACGTGCTCCGGAACCACAGGGTAGGCAGCAAAAGGCATTGCAAGCAAAAGATGAGGACGATGAACTGGACGAGCAAGAAGACGATGAACACGGGGAAACCTTGTGTGGGGCATGTGGCGAGCATTATGGCACCGATGAATTCTGGATTTGCTGTGACATTTGCGAGAAGTGGTTCCATGGGAAATGCGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAGTACAAGTGCCCATCATGCAGTAATAAGCGAACTCGCCCCTGA 762 0.4816 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINEVPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSNSKARAPEPQGRQQKALQAKDEDDELDEQEDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1035 253 Pfam PHD-finger 200 249 IPR019787 -
Amo19g1035 253 MobiDBLite consensus disorder prediction 145 191 - -
Amo19g1035 253 CDD PHD_AL_plant 199 249 IPR044104 -
Amo19g1035 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Amo19g1035 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Amo19g1035 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Amo19g1035 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Amo19g1035 253 SMART PHD_3 199 247 IPR001965 -
Amo19g1035 253 MobiDBLite consensus disorder prediction 150 169 - -
Amo19g1035 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Amo19g1035 253 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 253 - -
Amo19g1035 253 PANTHER CPG BINDING PROTEIN 6 253 IPR045104 GO:0006355|GO:0042393
Amo19g1035 253 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1035 Amo-Chr19 17937399 17942473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1035 5 252 Alfin-like Transcription Factor Family AT3G42790 76.210 9.93e-128 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Amo19g1035 Alfin 3.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1035 - - gmx:100170700 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1035 19 17937399 17942473 Amo18g0333 18 4574526 4577524 ECH
Amo19g1035 19 17937399 17942473 Amo19g1035 19 17937399 17942473 ECH
Amo18g0333 18 4574526 4577524 Amo19g1035 19 17937399 17942473 PCT
Amo19g1035 19 17937399 17942473 Amo18g0333 18 4574526 4577524 PCT