Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1029 ATGGCTTTAAAACAGCGGGGCATCAAGGCTGAATATCTTGGAAGTGCTCAGAAGGATTCCACTGTTCAGAGAAAAGCCGAGCAGGGTCAATTTGACATTTTGTTCATGACTCCGGAAAAGGCTTGCACAGTTCCTACCAGTTTCTGGTCTAACTTGCTGAAGGAAGGAATTAGCCTTTTTGCTGTTGATGAAGCTCATTGTATATCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGAACTTACACAATTTACGTAGTGTTCTGCTAGATGTTCCTTTTGTTGGCTTAACTGCAACTGCTACTGAAAAGGTTCGATTTGACATTATCAACTCCCTGAAGTTGAAGAATCCATATGTTTTGGTTGGTTCATTTGATCGCTCCAATCTTTTCTATGGGGTCAAGCCATTTAGCCGTGGACAATCTTTTGTTGATGAACTTGTACAAGAAATTTCAAAAGTTGTTAGTAGTGGTTCAACTATAATTTACTGCACAACAATAAAGGACGTAGAGCAGATATCCAAGTCACTTGCGGAAGCAGGAATTGAGGCTGGAATGTACCATGGCCAAATGGATAAAAAATCTCGTGAAGAGTCTCATAGGTTATTTGTCAGGGATGAACTGCAAATCATGGTGGCTACTATTGCTTTTGGCATGGGCATAGATAAGCCTAACATAAGACAAGTGATTCATTATGGTTGCCCTAAGAGTCTTGAGTGCTACTACCAGGAAAGTGGGCGCTGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGTGACTTTTATTGCGGAGACCTAAAAACAGAAACCCAAAAAAGAGCTGTTATGGAGTCATTGCTCGCTGCTGAACGTTATTGTGTGCTTGCAACTTGCAGGAGAAAGTTCTTGCTTGAACACTTTGGGGAACAATATCCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAGAAGGAGCGCGACATGTCTAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGAAAATGGGGTCTTAATATGCCCGTTGATATCTTGCGTGGGTCTCGAGCGAAAAAGATTCTCGATGCCCAGTTTGATAAGCTTCCCCTTCATGGACTTGGAAAAACTTATGCACCAAACTGGTGGAAAGCACTCGGGCATCAGTTGATCGCTCATGGTTATTTGAAGGAAACTGTCAGTGATGTGTACAGAACTATAAGTGTCAGTTTAAAAGGAGAACAATTTTTGGCCTCTTCTACACCTGATTATCAACCTTCCTTAGTTTTGTCACTGACTGCTGAGTTGCTCGGAGAAGAGGAAAATATGAGCACACAAGAAGAATCAAAAACTCTGGCCACTTCAGATTTAGACGGGTTTTCAGAGGTTGAGCGACAGCTCTACCAGATGCTTTTAGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACTGCTCCATATGCCATATGTGGCGATCAAACAATTAAGAAAATTACTCTTGTAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGACGGTGTGAATCAGATCATTTTCTTAAGAGTTATCCAGCAACTGTCACAAGGATTAAACTTACCATTGGACGGGGAAGCTAATTTACAAATTAACGAAGTAAGAAATTATCTACAGTTCAGTAAAAAACAGTTCAAAGAAGTTGACACCAGCAAAAACTTTCCAGGTAGATCAGCTCCTATAAAAGAGCAAACTGTTGCTGAATATCTGTTGGAAGCTGCACAAGAAGGATTACCTTTTGATTGGAGTAGATTCTGTGAGGTGATAGGACTGACGCAAGAGATCGAATCTGAAATTCAGGGTGCTATTTTAAAGGTTGGATCTAAAGATAAGCTGAAGCCTATAAAAGATGAATTGCCAGAAAATGTCACTTATCAGCACATCAAGACTTATTTGACAATGCAAAGCTGTGGTGTATCCAAAGATGACATCCAGACTCAGAAAGACAGCGAATCGGAAATACAGCAAGTGGAAACGCATTGTGAAGCCAACATTTCTGACCACAGCTTGATGGAAAAATGTGACTTGGAAATGGATAAAGTAGCATCTAGACCAGTGGAATTCACAACCAAACGTCAGAAAGTCAGTGACATGAAGGAAATAAATTCAACTGACTTCAAAGCTACTGAGAATTCTATATTAGAGTGGCTAAAGCACCATGATGAAGGGGCTACTTTGGTTGAAATTCAAGGGCACTTCAACGGGTCTGGCGAAGATTGTGTGGTTGATCTGCTGAATTTATTGGAAAGTGACTTTTTAATTTATAAAAAAGGTGGCATGTATAGGGTCCTGTAA 2355 0.4051 MALKQRGIKAEYLGSAQKDSTVQRKAEQGQFDILFMTPEKACTVPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKNLHNLRSVLLDVPFVGLTATATEKVRFDIINSLKLKNPYVLVGSFDRSNLFYGVKPFSRGQSFVDELVQEISKVVSSGSTIIYCTTIKDVEQISKSLAEAGIEAGMYHGQMDKKSREESHRLFVRDELQIMVATIAFGMGIDKPNIRQVIHYGCPKSLECYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDLKTETQKRAVMESLLAAERYCVLATCRRKFLLEHFGEQYPADRCGNCDNCTVSKKERDMSREAFLLMACIHSCKGKWGLNMPVDILRGSRAKKILDAQFDKLPLHGLGKTYAPNWWKALGHQLIAHGYLKETVSDVYRTISVSLKGEQFLASSTPDYQPSLVLSLTAELLGEEENMSTQEESKTLATSDLDGFSEVERQLYQMLLEERLKLARSVGTAPYAICGDQTIKKITLVRPSTKARLANIDGVNQIIFLRVIQQLSQGLNLPLDGEANLQINEVRNYLQFSKKQFKEVDTSKNFPGRSAPIKEQTVAEYLLEAAQEGLPFDWSRFCEVIGLTQEIESEIQGAILKVGSKDKLKPIKDELPENVTYQHIKTYLTMQSCGVSKDDIQTQKDSESEIQQVETHCEANISDHSLMEKCDLEMDKVASRPVEFTTKRQKVSDMKEINSTDFKATENSILEWLKHHDEGATLVEIQGHFNGSGEDCVVDLLNLLESDFLIYKKGGMYRVL* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1029 784 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 119 IPR014001 -
Amo19g1029 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 374 IPR027417 -
Amo19g1029 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 121 IPR027417 -
Amo19g1029 784 Gene3D HRDC domain 468 537 IPR044876 -
Amo19g1029 784 Pfam HRDC domain 473 525 IPR002121 GO:0003676
Amo19g1029 784 Pfam Helix-turn-helix domain 580 652 IPR029491 -
Amo19g1029 784 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 146 296 IPR001650 -
Amo19g1029 784 Pfam RecQ zinc-binding 277 326 IPR032284 -
Amo19g1029 784 SMART RQC_2 333 437 IPR018982 GO:0006260|GO:0006281|GO:0043138
Amo19g1029 784 ProSiteProfiles HRDC domain profile. 469 554 IPR002121 GO:0003676
Amo19g1029 784 Pfam Helicase conserved C-terminal domain 146 251 IPR001650 -
Amo19g1029 784 SUPERFAMILY HRDC-like 468 532 IPR010997 GO:0000166|GO:0044237
Amo19g1029 784 CDD SF2_C_RecQ 127 261 - -
Amo19g1029 784 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 645 - -
Amo19g1029 784 Gene3D - 328 454 IPR036388 -
Amo19g1029 784 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 2 384 IPR004589 GO:0004386|GO:0006310
Amo19g1029 784 Pfam RQC domain 330 426 IPR018982 GO:0006260|GO:0006281|GO:0043138
Amo19g1029 784 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 1 645 - -
Amo19g1029 784 Gene3D - 127 327 IPR027417 -
Amo19g1029 784 Gene3D - 1 125 IPR027417 -
Amo19g1029 784 SMART helicmild6 171 252 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1029 Amo-Chr19 17740012 17751426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1029 161 268 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 4.30e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1029 K03654 - gmx:100797777 1201.42