Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1024 ATGTTAACTTGCATAGCATGTTCCAAGCAACTCAACAATGGATCTCTTCACCAACCAGAAGATGAAGAAGCTGTTCATACACCAAGCACGAAGCAAGCCATCAAGGCTCTCACTGCCCAGATCAAGGACATGGCAGTGAAGGCTTCTGGGGCATATAAGAATTGCAAGCCTTGTTCCGGATCTTCAAATGGTAATAGGAAAGGGAATTATGCTGACTCGGATATGGGTTCGGATTCAGCGAGGTTTCACTGGGCCTACCGAAGAACGGGTAGCTCCAATTCAACCCCAAGGATGTGGGGGAAGGAAATGGAAGCCAGGTTGAAAGGGCTTTCGAGTGGGGAAGGGACGCCGGCATCGGTTAGTGGACGGACYGAGTCAGTGGTGTTCATGGAGGAGGATGAGCCTAAAGAATGGGTTGCACAAGTGGAGCCCGGTGTGCTCATTACTTTTGTTTCATTGCCTCAGGGTGGGAACGATCTGAAGCGGATACGGTTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAGAGGTGGTGGACSGAAAACTACGACAAGGTCATGGAGTTATACAATGTTCAAAGGTTCAATCAACAAGCTGTTCCTCTTCCAACCCCACCTAGATCTGAAGATGAGCAAAGTTCAAGGATTGAATCTGTGAGGGACAGCCCAGTCACTCCTCCTCTCAGCAAGGAGCCSCTGCCTAGTCATTTTCACCACCCAATTGGAATGGGGTACTCTTCTTCGGATTCTCTGGATCACCACCATACGCAACCTCGCCCTTGCTATGAAACTAGCTGTCTAGCCTCAACACCTAAACTCTCCGACATTACTGCAATAAAAACTGAAAGATCATCCCTGGATGCTTCAGCAAGGACGAGTTCATTGGGAGAGGGAGACCACTCGGGTGAGCTCTCAAACAGCAATGCCAGTGATATGGAAACTGAATGGGTTGAACAAGATGAACCGGGAGTATACATCACTATCAGAGCACTGCCAGGCGGAGCCAGAGAACTTCGGCGAGTACGGTTCAGCCGAGAGAGGTTCGGAGARATGCATGCTAGATTATGGTGGGAGGAGAACCGCGCCAGGATACAAGAACAATACTTGTGA 1110 0.491 MLTCIACSKQLNNGSLHQPEDEEAVHTPSTKQAIKALTAQIKDMAVKASGAYKNCKPCSGSSNGNRKGNYADSDMGSDSARFHWAYRRTGSSNSTPRMWGKEMEARLKGLSSGEGTPASVSGRTESVVFMEEDEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWTENYDKVMELYNVQRFNQQAVPLPTPPRSEDEQSSRIESVRDSPVTPPLSKEPLPSHFHHPIGMGYSSSDSLDHHHTQPRPCYETSCLASTPKLSDITAIKTERSSLDASARTSSLGEGDHSGELSNSNASDMETEWVEQDEPGVYITIRALPGGARELRRVRFSRERFGEMHARLWWEENRARIQEQYL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1024 369 ProSiteProfiles BRX domain profile. 314 369 IPR013591 -
Amo19g1024 369 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 369 IPR044532 -
Amo19g1024 369 MobiDBLite consensus disorder prediction 199 265 - -
Amo19g1024 369 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Amo19g1024 369 PANTHER PROTEIN BREVIS RADIX-LIKE 3 1 369 - -
Amo19g1024 369 MobiDBLite consensus disorder prediction 283 312 - -
Amo19g1024 369 Pfam Transcription factor regulating root and shoot growth via Pin3 313 368 IPR013591 -
Amo19g1024 369 Pfam Transcription factor regulating root and shoot growth via Pin3 136 190 IPR013591 -
Amo19g1024 369 ProSiteProfiles BRX domain profile. 136 191 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1024 Amo-Chr19 17618368 17622180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1024 1 369 Major Intrinsic Protein MIP AT1G31880 46.891 2.50e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1024 - - gmx:100805480 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1024 19 17618368 17622180 Amo19g1024 19 17618368 17622180 ECH
Amo19g1024 19 17618368 17622180 Amo09g0528 09 6934894 6938537 hybridization