Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1014 ATGAATTACAGAAAAAGAAAAGTGTTACGCATCATGCCGAAATGTGATCACACATTTCATCTTTCTTGCATTGACATATGGCTGAGGAAACAATCCACTTGCCCGGTATGCCGTCTGTCGTTAAAAAACTCATCCGAGGCAAAACATGTTAGAACTGTTACATTTACCACGAGCCAGCCTCTTGATGAGTCGCATAAGAATCAGCCTTATCAATGTTGTTGTTGA 225 0.4044 MNYRKRKVLRIMPKCDHTFHLSCIDIWLRKQSTCPVCRLSLKNSSEAKHVRTVTFTTSQPLDESHKNQPYQCCC* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1014 74 Pfam RING-H2 zinc finger domain 9 38 IPR024766 GO:0008270
Amo19g1014 74 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
Amo19g1014 74 PANTHER OS02G0676500 PROTEIN 2 65 - -
Amo19g1014 74 PANTHER OS11G0150450 PROTEIN 2 65 - -
Amo19g1014 74 ProSiteProfiles Zinc finger RING-type profile. 15 38 IPR001841 -
Amo19g1014 74 SUPERFAMILY RING/U-box 5 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1014 Amo-Chr19 17339268 17340017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1014 2 41 C3H Transcription Factor Family AT4G10150 55.000 8.74e-13 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1014 - - aip:107610428 128.642