Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1003 ATGATGAGTGCAAGTTTAAGTGGTAGTGCAAGGAACAGTAGTAGGTCTCCTTTCACCCCAAATCAGTGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTTACAGGTACCCCAATCCCACCAGATCTCATATTCTCAATTAAAAGAAGCCTAGACTCCTCAATATCTTCAAGACTCTTCCCACACCATCCAAGTAAGTGGTGCAGTTGGGTATGCATATTTTCAAATGGGTTTTGCAGAAAAGTAGACCCGGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGGTGCTCAAAGGAAGCATATCCAGATTCTAAGTACTGTGAAAGGCACATGCACAGAGGCAGGAACCGTTCAAGAAAGCCTGTGGAAATTTCTTCATCATCAACACAAACACAAACACAAAACACAAACAACACACAACACTTCCTCTTCTCAAGTCATGAATCATCATCCATCAATCTTCTTATACTGTTAACAGGTGCTACAAAACTTTTAAAAAATGAAAGCATAATAATAATAACATGGCTTTCTTCAACAGCTTGTTCTTTCAGTTTCAACCCATCTGAGTCACAGCAGCAGCATCAATACTTCTCCCAATCTTACCAAAACCCCTTCTTTTACACCCAATCAACGTCTTCWTCTTCTTCTTCTAAACACCATGATGCTGATTTTCCTCCTCATGATGCCACCACACACCACTTATTCATGGACTCCGGCTCTTATTCTCATGACCAAAAGGACTATAGGCATATTCATGGAATGAGGGAGGATGTGGATGAAAGAGCTTTCTTTCCAGAAGCTTCTGGTTCAGCTAGGAGCTACCTTCATGACTCATATCAGCACCATCACCACCACCAACAACAACAACAGCATCTATCAATGGGTTCCTACAAGAACTACTCATCAAATTCCCATTTCCAAATCATGAACAACAATAGTAATAACGACGATCCAAGAAACCAAGAGCAACATTGCTTTGTGTTGGGGACAGACTTCAAATCAACGAGCAAAGAGAAAGACAACACTGAGAAAACAACATCAACAACACAGCAAAGACCCCTTCACCACTTCTTTGGTGAGTGGCCACCAAAGAACACTGATTCATGGCTTGATCTTGCTTCCAACTCTAGAATACCCTCCTCAGATGAATGA 1170 0.4137 MMSASLSGSARNSSRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDSSISSRLFPHHPSKWCSWVCIFSNGFCRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSSSTQTQTQNTNNTQHFLFSSHESSSINLLILLTGATKLLKNESIIIITWLSSTACSFSFNPSESQQQHQYFSQSYQNPFFYTQSTSSSSSSKHHDADFPPHDATTHHLFMDSGSYSHDQKDYRHIHGMREDVDERAFFPEASGSARSYLHDSYQHHHHHQQQQQHLSMGSYKNYSSNSHFQIMNNNSNNDDPRNQEQHCFVLGTDFKSTSKEKDNTEKTTSTTQQRPLHHFFGEWPPKNTDSWLDLASNSRIPSSDE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1003 389 Pfam WRC 87 129 IPR014977 -
Amo19g1003 389 PANTHER - 10 386 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo19g1003 389 MobiDBLite consensus disorder prediction 1 20 - -
Amo19g1003 389 MobiDBLite consensus disorder prediction 283 389 - -
Amo19g1003 389 ProSiteProfiles QLQ domain profile. 17 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo19g1003 389 MobiDBLite consensus disorder prediction 295 327 - -
Amo19g1003 389 Pfam QLQ 17 50 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo19g1003 389 MobiDBLite consensus disorder prediction 374 389 - -
Amo19g1003 389 MobiDBLite consensus disorder prediction 127 141 - -
Amo19g1003 389 ProSiteProfiles WRC domain profile. 86 130 IPR014977 -
Amo19g1003 389 MobiDBLite consensus disorder prediction 214 234 - -
Amo19g1003 389 SMART QLQ_2 16 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo19g1003 389 MobiDBLite consensus disorder prediction 116 141 - -
Amo19g1003 389 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 10 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1003 Amo-Chr19 17029482 17031747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1003 1 366 GRF Transcription Factor Family AT3G13960 38.718 1.60e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Amo19g1003 WRC 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1003 - - ahf:112710413 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1003 19 17029482 17031747 Amo19g1003 19 17029482 17031747 ECH
Amo19g1003 19 17029482 17031747 Amo09g0474 09 5954349 5956985 hybridization