Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0972 ATGAACATGGAACCAAACCCAACACAAGATGCTCTTGACTGGCAGCTAGAAGGTTCTGCCTCTTTCTTCCCACCATTCTTGGATTATCCATATCCCATTCAAGATTATCAGTTCTGGGATCAAAACCAAGACATAATCTGCTACCATAACCAAATTGATGCCGGCACCGGATCCCCGAATGCCGCAAACGGCACTGCCGCCGTGGTGGCCACCACTGCCACCAGTACAACCTGCACAACACCCTCGGATCCTGAACCTTACAGTTACAACAACCTACCAGTTTCAGACTTGCCGACGAAGAAACGAAACTCCAGCGACAATGATTGCTCGGTCCAAAAGCCTTCACAGAGCCACAGAGCCAAGAAATTCAAGGCTCGTTCAACTAATGAAGTTGACAATGGCGATTCAGTTGCCGAAGGGACTAGTGTTAGAAAATCTGGTGGGAACAAAAAAGGTGGAGGCAAGAACAATGGCAATAACTGCAACAATGGAAACAAGGAAGGTAGGTGGGCGGAACAGTTGCTCATCCCTTGTGCTTTAGCTATAAATGCTAAAAATTTGAATCGTGTACAGCACCTCTTGTATGTGCTCCATGAGCTAGCCTCGCCTACAGGCGATGCGAATCACCGACTCGCGGCACACGGACTCAGCGCACTGACACACCATCTATCCTCATCGTATTCGTCTTCATCTTCTTCTACCATAACAAACGATTCAGGGACTAAGACTTTTGCATCAGTGGACTCCAGATTCTTCCATAAGACACTCCTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCTAACAACATTGCAAACGCTTCAATCCTTCAATTCCTTTCCGAAGAAGAATCAAGTAGTTCGCGTACTCTTCACATCCTTGACATTGGAGTCTCCCATGGTGTCCAATGGCCTACTTTTCTTGAGGCGTTAACCCGAAGACCCGGCGGACCTCCTCCTCTGGTTCGCCTAACCGTTGTAACCGCTTCCTCCAATGAAAATGAACAGAACATGGAAACTCCTTTCTCTGTAGGTCCACCCGGTGATAACTTCTCTTCTTACCTCCTTGGTTATGCTCAAACCATTAAGCTCAATTTGCAGATAAACAGGATTGATAATCTTGAATTACAGACACTGAATTCGAAGAGTATCGACACATCTTCGGATGAAACATTTATTGTCTGTGCGCAGTTTAGGCTCCACCACTTGAATCATAGAAATCCTGACGAGAGGAGCGAGTTTCTGAAGGCTTTGAGAAGCATGGAGCCTAAAGGAGTGATACTAAGTGATAACAACATTGAATGCAGTTGCAATGGCTGTGGAAACTTCGCGGCCGGATTCTCCCGGAGAGTGGAGTACCTGTGGAGTTTCTTGGATTCCACGAGTGTTGCATTCAAGGGCCGGGAGAGTGACGAAAGGAGAGTGATGGAAGGCGAGGCGGCGAAGGCCCTGACCAACCAGAGGGAGATGAATGAAGGGAAAGAGAAATGGTGTGAAAGAATGAAGGAGGCAGGGTTTGTAGGAGGAATGCTTGGAGAGGATACCATTGATGGAGCTAGAGCTTTGTTAAGGAAATATGATAGTAATTGGGAGATGAAAGTTGAGGAGGATAACAAGTGTGTTGGACTATTCTGGAAGGGACAGGCTGTTTCTTTCTGTTCTATGTGGAAGTTGGATGGGGGAGAAAAACAAGGTAGATCAAGTTCTACATTGAATTCGCGTTTATAG 1731 0.4639 MNMEPNPTQDALDWQLEGSASFFPPFLDYPYPIQDYQFWDQNQDIICYHNQIDAGTGSPNAANGTAAVVATTATSTTCTTPSDPEPYSYNNLPVSDLPTKKRNSSDNDCSVQKPSQSHRAKKFKARSTNEVDNGDSVAEGTSVRKSGGNKKGGGKNNGNNCNNGNKEGRWAEQLLIPCALAINAKNLNRVQHLLYVLHELASPTGDANHRLAAHGLSALTHHLSSSYSSSSSSTITNDSGTKTFASVDSRFFHKTLLKFYEVSPWFSFPNNIANASILQFLSEEESSSSRTLHILDIGVSHGVQWPTFLEALTRRPGGPPPLVRLTVVTASSNENEQNMETPFSVGPPGDNFSSYLLGYAQTIKLNLQINRIDNLELQTLNSKSIDTSSDETFIVCAQFRLHHLNHRNPDERSEFLKALRSMEPKGVILSDNNIECSCNGCGNFAAGFSRRVEYLWSFLDSTSVAFKGRESDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFVGGMLGEDTIDGARALLRKYDSNWEMKVEEDNKCVGLFWKGQAVSFCSMWKLDGGEKQGRSSSTLNSRL* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0972 576 MobiDBLite consensus disorder prediction 76 100 - -
Amo19g0972 576 MobiDBLite consensus disorder prediction 76 161 - -
Amo19g0972 576 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 4 558 IPR030015 -
Amo19g0972 576 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 558 IPR005202 -
Amo19g0972 576 ProSiteProfiles GRAS family profile. 162 558 IPR005202 -
Amo19g0972 576 Pfam GRAS domain family 172 558 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0972 Amo-Chr19 16310747 16312848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0972 5 558 GRAS Transcription Factor Family AT3G13840 48.841 8.99e-166 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo19g0972 GRAS 3.8e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0972 - - aip:107615113 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0972 19 16310747 16312848 Amo19g0972 19 16310747 16312848 ECH
Amo19g0972 19 16310747 16312848 Amo09g0466 09 5780264 5782417 hybridization
Amo19g0972 19 16310747 16312848 Amo18g0350 18 4690232 4691629 PCT