Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0954 ATGTTTTCGTGGTTGGCAAGGATAGTTTCGGCGTGCTTGAGGCCAGTAGTGAGGCGATATGCGCGTATGAACAAGGATGATGATCGCGATCTCGATGACGATCCCTCTTCTCTTCACGATTCCCTGTTATGGTGCAGGGATCTCGAGAAGCACTCGTGCGGTGAGTTTTCTTTTGCTGTTGTTCAGGCAAATGAAGTGATTGAGGATCACAGCCAGGTTGAGACAGGTCCCGACGCCGTGTTTGTTGGTGTTTACGACGGACATGGCGGCCCTGAGGCCTCTAAGTTCATCAATGAACACCTCTTCCGCCACCTCATCACGATTGCACAAGAAAATGGTTCTATCTCCGAAGATATTATCAGGGGTGCTGTTTCTGCTACTGAAGATGGTTTTTTAACTCTCGTCCGAAGGAGTTACGGGATAAAGCCATTGATAGCGGCAATGGGTTCCTGTTGTCTGGTTGGTGTTATCTGGAAAGGCACACTGTATACTGCCAATCTTGGAGACTCTCGTGCTGTAATTGGCTCTGTAACCAGATCTAACAAGATAGTTGCAGAACAGTTGACTAGAGAGCACAACGCTAGCAAAGAGGAGGTTAGACGAGAACTCAGGTCTTTGCACCCTGAAGATTCACAAATTGTAGTTATGAAGCATGGAACGTGGCGAATTAAAGGCATCATCCAGGTATCCAGATCAATAGGAGATGCATATCTAAAGCGCCCAGAGTTCTCTTTTGATCCTTCGTTCCCACGGTTCCACCTGCCCGATCCTATCCGTCGGCCTGTGCTAACAGCAGAACCATCTGTGTGTTCACGAGTTTTACAACCTAATGATAAATTCCTTATATTTGCATCTGATGGTCTTTGGGAACACTTGACAAATCAGGAAGCAGTTGAGATTGTTCACAAAAGTCCTCGACCTGGGATTGCAAGGAGACTTCTCAAGGCTGCACTAACCGAGGCAGCTCGGAAAAGAGAGATGAGATATAAAGACCTTCAAAAGGTTGAAAAGGGGGTTCGGCGGTTTTTTCATGACGATATCACGGTGGTTGTTATCTTCATTGACCATGAATTGGTTGGGAAGAATGTAACAGTTCCTGAATTGTCCATCAAAGGGTTTATGGACTCGGTTGGACCATCGAATTTTAGAAGCTTTCAGCATATGCCATAA 1170 0.4615 MFSWLARIVSACLRPVVRRYARMNKDDDRDLDDDPSSLHDSLLWCRDLEKHSCGEFSFAVVQANEVIEDHSQVETGPDAVFVGVYDGHGGPEASKFINEHLFRHLITIAQENGSISEDIIRGAVSATEDGFLTLVRRSYGIKPLIAAMGSCCLVGVIWKGTLYTANLGDSRAVIGSVTRSNKIVAEQLTREHNASKEEVRRELRSLHPEDSQIVVMKHGTWRIKGIIQVSRSIGDAYLKRPEFSFDPSFPRFHLPDPIRRPVLTAEPSVCSRVLQPNDKFLIFASDGLWEHLTNQEAVEIVHKSPRPGIARRLLKAALTEAARKREMRYKDLQKVEKGVRRFFHDDITVVVIFIDHELVGKNVTVPELSIKGFMDSVGPSNFRSFQHMP* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0954 389 PANTHER ALPHABET, ISOFORM E-RELATED 6 375 - -
Amo19g0954 389 Gene3D - 39 363 IPR036457 -
Amo19g0954 389 SUPERFAMILY PP2C-like 61 355 IPR036457 -
Amo19g0954 389 CDD PP2Cc 56 354 IPR001932 -
Amo19g0954 389 Pfam Protein phosphatase 2C 74 320 IPR001932 -
Amo19g0954 389 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Amo19g0954 389 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 375 - -
Amo19g0954 389 Coils Coil 185 205 - -
Amo19g0954 389 ProSiteProfiles PPM-type phosphatase domain profile. 55 354 IPR001932 -
Amo19g0954 389 SMART PP2C_4 49 352 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0954 Amo-Chr19 15989734 15994277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0954 1 385 PP2C-type Phosphatase Gene Family AT5G06750 71.939 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0954 K01102 - gmx:100778238 665.611