Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0939 ATGGATCATTCAACCTCAGATTGTCAGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGACGCTCGGGTGTAGATCAGGTCTTTTTTTGGTTGTTGTTGTTCATGTGTATTATATCAGACATGATTGGCCTCTCTCAGTTGTTGATGACGAGCTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGAAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATCCGATAGCCGGTTTAAACTGTCCAGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACTCCTGTTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACGATAGAGAATAACGAGGAGGCCGACCGTCACATATGGGTTCCTATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGTATGCATTCATTTTTTAACAAGTATATCACCCAGAACAGCTCGTTTATTCAGTTCGTCAAACAATACGATAATTGCCTCAGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGCGTACACTCATCAAAGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATATGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTCGTGGTTACTTACGACTCAGTTGCAGCCAAAGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCCCCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACATACACACATCAAGAGCAGCCACGACGAGCCACTGATGGAGCCAAGAAGCAAGAGGTTCGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGGCCGAGATGGAATCATTTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAAACGCCAACTTGGAATCCGTTAA 1332 0.4392 MDHSTSDCQLNPGEVDYEFESNEVPETLGCRSGLFLVVVVHVYYIRHDWPLSVVDDELVPKVGMTFTTLEDAEKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPIAGLNCPARIYIHTLKDVGAWIISKVVLDHSHSCCPSKAEMLKQHRELSMSIRRTIENNEEADRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKYITQNSSFIQFVKQYDNCLRSREQAERESDAADFHTVIPCATKSSIEAQFQDAYTHQRKANCITRLKNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAKVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTAILHRAYDNVMAEMESFKSQKEGDIFFIPRKRQLGIR* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0939 443 Pfam FAR1 DNA-binding domain 74 159 IPR004330 -
Amo19g0939 443 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 55 171 IPR031052 GO:0006355
Amo19g0939 443 SMART 26again6 320 347 IPR006564 GO:0008270
Amo19g0939 443 ProSiteProfiles Zinc finger SWIM-type profile. 309 345 IPR007527 GO:0008270
Amo19g0939 443 PANTHER OS03G0843700 PROTEIN 187 413 - -
Amo19g0939 443 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 187 413 IPR031052 GO:0006355
Amo19g0939 443 PANTHER OS03G0843700 PROTEIN 55 171 - -
Amo19g0939 443 Pfam SWIM zinc finger 311 342 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0939 Amo-Chr19 15482093 15484824 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g0939 FAR1 1.8e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0939 - - adu:110280503 450.669