Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0918 ATGACGAACGAACATTCACCTTTGGAGCCACACGAACTCAGCAGCGACCAGGGTTCCTACTGTGACGATTTCGAAGGAGATCCTTGTTATGAAGAAACGGAGAACAAGTTCTCGTACCTCTCACTCTCACCTTCCACGAACAAGGCAAAAGCAAGAGTTGTTGATGGTACAAATCCACAAGAGATAGAGATAACAACACCTGCTTTTAACGAAGCGAATTTTGAGAGGGTTGAAAGGTTAATCAAAGGGGGAATGCTAGAGAGATTGAAAGTTGACGAATGCAAATTGTATTTGCGAAAGAATTGTCTGAGGCTATCTGGAAATAAGGATGTACTTGTCCAGCGTATTAAGGAGCATCTGCAGATCATAAATGGTGGAGGGGAAAGAAAGTACCCACCCTCTAGCTTTGTATTGGACTGTAAAGGTGATGCATGCACTGGGGATGTTGTTTTGTTTGAGCAGAATGTTTATGAAATGTTCAACATAGCATCTAGAAGTGCCAGCGGTCCATCATGTGGTAAAAGGACTGTTGCAGGTCGCATAGTGAAAGAAAGCTATGGCACTGCCAAACAGCAGCATACTTTTACAATTGAAGTACTKTGGAGCAAAGGAGAAAAGCCTTTTCCTCCYCTTCATCCCCTATTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGGAAAGGCAGAAAATATTGACGGAGAAACACTCGAGGGGATCTATTGCTCGGGAAGATAGAGAAGCAAGGGTACAAGAAAAAGTGAACAGAAAAGCAATTGTGGAAAACAGGGTCTCCAGAAAGCATTCAGTAATACATCATCCTCATGCCATTAATCAAGAAAAACCAGCATTCCCATCTAAGAGTTCAGCTGTATCTGCCATTAATCAAGAAAAACCACCATTCCCATCAGTAGTGACTGAACAGGGGGGTAAGTCCGTTAGTTCTAGACGATCGAATGAATCGACATCTTTTGGTGTTAACCATGTAAATAACCAGCAAGATTGGAAGCACTCATCTGACCCAATCATTAAAGCTCAACTTGGTGACCTCCACTCCAAACAAAAAGAGCAATACCAATACCAATACCATCCTAGTGAGAGAAACAGGTTTGCACAAAGAAATCCTTTGACTAGTGCTAATCACCTTCTTCCGTTGCTGAACAACAGAGAAATCCACAAGCAAAAGCAGCTATGTAGATATTATGCTCGTGGGCGGTGCTATTTTGGGGACAATTGCAAATTTGTACATGATTTGATACTATCAAATCAAGAACAAAGTCTTATCCACTAG 1317 0.4184 MTNEHSPLEPHELSSDQGSYCDDFEGDPCYEETENKFSYLSLSPSTNKAKARVVDGTNPQEIEITTPAFNEANFERVERLIKGGMLERLKVDECKLYLRKNCLRLSGNKDVLVQRIKEHLQIINGGGERKYPPSSFVLDCKGDACTGDVVLFEQNVYEMFNIASRSASGPSCGKRTVAGRIVKESYGTAKQQHTFTIEVLWSKGEKPFPPLHPLLIKGRNLYRLKTLRQKWEDEGERQKILTEKHSRGSIAREDREARVQEKVNRKAIVENRVSRKHSVIHHPHAINQEKPAFPSKSSAVSAINQEKPPFPSVVTEQGGKSVSSRRSNESTSFGVNHVNNQQDWKHSSDPIIKAQLGDLHSKQKEQYQYQYHPSERNRFAQRNPLTSANHLLPLLNNREIHKQKQLCRYYARGRCYFGDNCKFVHDLILSNQEQSLIH* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0918 438 Gene3D - 395 436 - -
Amo19g0918 438 SUPERFAMILY CCCH zinc finger 401 426 IPR036855 GO:0046872
Amo19g0918 438 SMART c3hfinal6 402 427 IPR000571 GO:0046872
Amo19g0918 438 ProSiteProfiles Zinc finger C3H1-type profile. 402 428 IPR000571 GO:0046872
Amo19g0918 438 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 14 426 IPR045124 GO:0003723|GO:0045892
Amo19g0918 438 Gene3D SAP domain 78 132 IPR036361 -
Amo19g0918 438 Pfam CCCH-type zinc finger 406 426 IPR041367 -
Amo19g0918 438 Pfam SAP domain 86 120 IPR003034 -
Amo19g0918 438 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 14 426 - -
Amo19g0918 438 MobiDBLite consensus disorder prediction 308 345 - -
Amo19g0918 438 SUPERFAMILY SAP domain 76 121 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0918 Amo-Chr19 15016254 15019907 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo19g0918 SAP 7.5e-07 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0918 - - ahf:112777670 893.649