Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0889 ATGGAGATTTTCTCCGGTGATATCTCCTCCAGCGAAGATATCCTCCAACAGCGATCTCCTCCGGCGATATTTGCTCCAGCGACGATCTCCTCCTGCGACATCTGCTCCAGCGACGATCTCCCTCCTCCAACGTCTCCTCTAGCGACGATCTCCTCCGGCTTCCTCCTTGTCGTCCTCTGTGTCCTCTCTGCCAAATCTTCAGTGTCTCCCTTTTGTTCTGGATCAGCAGCTTACGGAAATGGAAAAGTTTTGGTGTCACTTATAAACCAGGTATTAGATCTGGCAAAGATTGAAGCTGGTAAGCTAGAGCTTGAAGCTTCGCTGTCAAATGAAGAAGTTGGTCCCTTGTCTCCTTTATTTGTTAGTATTACTGCTGGATTGTCAGCTTCAGTTGCTGCTGCGGCTTCTCATGCCTTTGATACTACAAGAACTAGATCACAGTGCACTGTGCTACCAAAGATATATGTCTATTTGTTTTCCTTATCTGTTGGTACTTTTGATGGCATTCCAGGGATATTCTACAACTTAAGGGGAGCTGAGAGCCTTGCCGCAAGGTGGTTTGCTAAAAGATTTCTGCATCCTGATATAGTGTCTATTTATGATTATGCCTTTCTTTGGGATGAGGATTTAGGAGTGGAGCATTTTTCTCCTTCAAGGCTTTATTCTTCAGAAAATGAGGATTCCTTAAAGGCCTTGAAAGAAAAGGAAAAAGAGCTTTCTGCACCTGAGCCTGAACCAGAGCCAACTACTGAAGTACTTCTCCTATGCAGCTATGAAGGCTGTAGAAAGACATTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGCGGCAATTTGTTTGCCACTATGAGGGATGTGTAAAGAAATTTCTGGACAGCTCAAAGCCTCAAAGTTGA 909 0.4477 MEIFSGDISSSEDILQQRSPPAIFAPATISSCDICSSDDLPPPTSPLATISSGFLLVVLCVLSAKSSVSPFCSGSAAYGNGKVLVSLINQVLDLAKIEAGKLELEASLSNEEVGPLSPLFVSITAGLSASVAAAASHAFDTTRTRSQCTVLPKIYVYLFSLSVGTFDGIPGIFYNLRGAESLAARWFAKRFLHPDIVSIYDYAFLWDEDLGVEHFSPSRLYSSENEDSLKALKEKEKELSAPEPEPEPTTEVLLLCSYEGCRKTFIDAGALRKHSHIHGERQFVCHYEGCVKKFLDSSKPQS* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0889 302 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 219 299 - -
Amo19g0889 302 PANTHER OS05G0106000 PROTEIN 219 299 - -
Amo19g0889 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 283 IPR013087 -
Amo19g0889 302 SUPERFAMILY beta-beta-alpha zinc fingers 255 279 IPR036236 -
Amo19g0889 302 Pfam Protein of unknown function (DUF707) 185 245 IPR007877 -
Amo19g0889 302 Gene3D Classic Zinc Finger 251 302 - -
Amo19g0889 302 ProSitePatterns Zinc finger C2H2 type domain signature. 256 278 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0889 Amo-Chr19 14588166 14591689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0889 226 299 C2H2 Transcription Factor Family AT4G06634 75.676 9.46e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo19g0889 DUF707 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0889 - - ming:122066436 112.464