Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0879 ATAGCACATTATTCCCAAGAACATACATACACCATGGCTAGTATCCTTTGGCACTTTGTTTTGCCCATTTTTCTTGCCACCCTTTTCTCTCCAAGCCCTACTTATGGTGCCAAGCAATCCAAAATAATTGGCATGAAAATGAATGTGATTGATCGGTGCTGGAGACGGGATCCCCAATGGAGGAGCCACCGCGCGCAACTCGCGAACTGCTCCATTGGCTATGCTGGCAAGATGATGAACAACATTGGCAGTGACCTCATCCATTATGAAGTTATAGACCCTACTGATGACCCCATAAACCCTAAGCCTGGTACCTTGCGATATGGAGCTTCTGTGATTCAACAAAAAGTTTGGATCACATTTAAAAGAGACATGAAAATTACATTGGCAAAACCCCTTCTCATTAGTAGCTTTACCGCCATTGATGGCCGCGGCGCCAACGTCCACATTGCTCATAACGCATGCTTTATGATCTTTAAGGCGACGAACGTAATAATCCACAACGTTCGGATCCATGATTGTAAAGCACAAGCTCCGGGATTGGTGATGGGTGCAAATGGGAAGGTGATTTCATTAGGTCAAGTTGATGGGGATGCCATTAGATTAGTCACTGCTTCAAAGATTTGGATTGATCATAATACACTTCAAGATTGCGAAGATGGTCTTCTTGATGTTACACGGGGTTCCACTGATGTCACTGTCTCCAATAACTGGTTCCGGAACCAAGATAAGGTTATGCTTCTTGGGCATGATGATGGATATATTAGAGACCAGAACATGAAAGTTACTGTTGTGATCCGTCATGGATATGCACATGTAGCAAACAATCTATACCAGGGATGGATGCAATATGCTATTGGTGGAAGCATGGGACCTAGCCTCAAAAGCCAATCTAACCTCTTCATAGCCCCCGAATCTGGGAACAAGGAGGTGACATGGAGAAAAGGCAACAGCGAAAATGGGAACATGTGGGAATTCCATTCTATAGGGGATGCTTTTGAAAATGGAGCTTCTTTCACGGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAGTGAGGAACAATATTTTAAGGTTCTTGATGCTAAATCTGTCAGATTTTTGACAAGATCCTCTGGCGTACTATGA 1131 0.4359 IAHYSQEHTYTMASILWHFVLPIFLATLFSPSPTYGAKQSKIIGMKMNVIDRCWRRDPQWRSHRAQLANCSIGYAGKMMNNIGSDLIHYEVIDPTDDPINPKPGTLRYGASVIQQKVWITFKRDMKITLAKPLLISSFTAIDGRGANVHIAHNACFMIFKATNVIIHNVRIHDCKAQAPGLVMGANGKVISLGQVDGDAIRLVTASKIWIDHNTLQDCEDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYIRDQNMKVTVVIRHGYAHVANNLYQGWMQYAIGGSMGPSLKSQSNLFIAPESGNKEVTWRKGNSENGNMWEFHSIGDAFENGASFTVTKGGRVPKPNYSEEQYFKVLDAKSVRFLTRSSGVL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0879 376 Gene3D - 47 376 IPR012334 -
Amo19g0879 376 PANTHER PECTATE LYASE 21 376 - -
Amo19g0879 376 Pfam Pectate lyase 137 301 IPR002022 -
Amo19g0879 376 SMART amb_all 124 307 IPR002022 -
Amo19g0879 376 PRINTS Pollen allergen Amb family signature 262 281 IPR018082 -
Amo19g0879 376 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Amo19g0879 376 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Amo19g0879 376 PRINTS Pollen allergen Amb family signature 355 376 IPR018082 -
Amo19g0879 376 PRINTS Pollen allergen Amb family signature 70 87 IPR018082 -
Amo19g0879 376 PRINTS Pollen allergen Amb family signature 324 348 IPR018082 -
Amo19g0879 376 SUPERFAMILY Pectin lyase-like 41 363 IPR011050 -
Amo19g0879 376 PANTHER PECTATE LYASE 18-RELATED 21 376 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0879 Amo-Chr19 14399273 14401182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0879 78 316 Polysaccharide Lyase AT5G09280 67.194 7.93e-128 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0879 K01728 - gmx:100780437 595.504