Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0844 ATGGAAGCTAATAGCGATCTTAAGATTCCTCTGTTGCAGACTTCACCAGAAGATGCCGCAGTAAGGACGGTTATGTTTCAAATAGGTGACATCAAGTGTGCATCGTGTATAAATTCTGTTGAATCTTCAATTAAGGACCTCCATGGAGTAAACAGCATCATGGTGTCGCCGCTTGATGGCCGAGCTATAATAAAATATTCTCCAAAATTTATCACTGCGAAAAACATAAAAGAAGCAATAGAAGACAGTGGCTTCGGAGTTGATGAGCTTCAGGAGCAAGAAATATCGGTATGCCGAGTAAGGATTAAAGGGATGGCATGCACAAGCTGCTCCGAGTCTGTTGAGAATGCACTTCGGATGATTGATGGAGTGAAAAAAGCAACTGTAGGTCTAGCTTTAGAGGAGGCCAAAGTGTACTTTGATCCTAACCTCGCCGATGCAAACAAGATAATTGAAGCTATAGAAGATGCTGGTTTTGGAGCGGAACTTATTAGCTCTGCTAATGATGTGAACAAAGTGCATTTAAAACTAGAAGGGGTTGATTCTCTTGAAGATGTAAATATTGTAATGTCTTCGCTTGAGTTCGCAGCAGGTGTGAATCATGTTGAATTCAATTTGACAGAACATATAGTAACAGTTAACTATGAACCGGATATTACGGGTCCAAGATCTCTCATTCACTTTATTCAGACAGCTAGCTCTGGCACCAAGATGTACCAGGCATCCTTGCACACTACTTCGGGAAAAAGAGAAAGGGATAAGGTGGATGAAATTCATAGGTATAGGGACCAATTTTTGTTCAGCTGCTTATTTTCGGTTCCTGTGTTTGTATTTGCCATGGTGCTTCCCATGCTTCCTCCCTATGGAAACTGGCTGAACTATAAGATCCACCATATGCTAACTCTTGGGCTGTTTCTGAGATGGATTCTTAGTACGCCTGTGCAGTTCATAGTTGGCAAAAGGTTTTATGTAGGATCATATCATGCACTGAGGCGAAGATCTGCTAACATGGATGTGCTGGTTGCATTAGGAACTAATGCTGCTTATTTTTACTCCGTATACATTTTAATAAAAGCACTGACTTCAGATACTTTTCAAGGACAAGATTTCTTTGAGACCAGTTCCATGTTGATATCCTTTATTCTATTAGGGAAATATTTGGAGAATTTGGCTAAAGGGAAAACCTCAGATGCTTTAGGAAAGCTGACACAACTTGTTCCTGATAAAGCTTATCTGGTGGACATGGATGCTGATGAAAATGTCATCTCAGAGACAGAAATTGACACTCAACTAATACAAAAGAGTGACATACTTAAGATTGTTCCTGGGGCCAAAATTCCTATTGATGGTGTTGTCATAAAAGGGCAAAGCTATGTAAATGAAAGTATGATTACCGGGGAGGCAAAACCTGTTGATAAAAGTCCTGGTGACAAGGTTATTGGTGGAACAATCAATGAGAATGGCTGCTTACTGATTAAGGCTACACATGTTGGATCAGATACTGCACTTTCTCAAATTGTTCAGCTTGTAGAAACCGCTCAACTAGCTAAGGCACCAGTTCAAAAACTCGCAGACCACATTTCAAGGGTTTTTGTTCCATTAGTGGTTGTTGCAGCATTTTTAACTTGGATGGGATGGTTTGTTCCTGGGGAAGTTGGTTTATACCCTAGGCATTGGATACCAAAAGCAATGAATGCATTTGAACTTGCTCTGCAATTTGCTATTTCTGTACTAGTTGTTGCTTGCCCTTGTGCTTTGGGTCTAGCAACACCAACTGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTTCTCATCAAGGGTGGAGATGCATTGGAAAAGGCACACAAGGTAAAAGTTGTTGTGTTTGATAAGACCGGGACACTAACCGTTGGAAAGCCGGTGGTAGTTAGTGCAGTACTGTTTTCTGATTTTACTATGGAAGAATTTTATGACATGACAATAGCAGTGGAGTCAAGTAGTGAGCACCCACTAGCAAAAGCTGTTGTTAAACATGCAAAGAAGCTGCGCAAGAAATTTGGTTCCAACGATGAGGAAGTGCCAGATGTGAAGGACTTTGAGGTGCAAGTGGGAGCTGGTGTGTGTGGAAAAGTTGGTGAAAGAACAGTTCTAGTTGGAAACAAGAGACTTATGCATGCTTGTAATGTTCCACTAAGTTCCGAGGTTGAGAGGTACATGTCTGAGAATGAAATTCTAGCGAGAACTTGTGTTCTGGTTTCCATCGACGGGAAGATTGCTGGAGCATACTCTGTAACTGATCCATTAAAGCCCGAAGCTAAGCGTGTCATATCTTTTCTCCACACCATGGGCATTTCAAGCATCATAGCAACCGGTGATAACCTTGCTACTGCAACTGCTATTGCAAACGAAGTTGGTATTGATGAGGTCTTCGCCGAGACAGATCCACTAGGGAAAGCTGATAAGGTGAAAGAATTACAGATGAAAGGGATGACTGTGGCAATGGTGGGTGATGGAATAAATGACTCGCCGGCCTTGGTTGCTGCTGATGTTGGTATGGCAATAGGTGCTGGAACTGATGTAGCCATAGAAGCAGCTGATATAGTGCTTGTGAAAAACAGCTTGGAAGATGTGATCACAGCCATAGATCTTTCCAGAAAGACCATGTTGCGTATCCGCCTCAACTATATCTGGGCTCTCGGCTATAACGTCCTAGGCATGCCGGTTGCTGCCGGTGTCTTATACCCCTTTACCGGAATCAGATTGCCCCCATGGCTCGCCGGTGCTTGCATGGCTGCTTCTTCTGTTAGCGTGGTTTCTTCATCTCTTCTGCTGCAATTGTATAAAAAACCTTTAAATGTTCAATGCATCTGA 2859 0.4243 MEANSDLKIPLLQTSPEDAAVRTVMFQIGDIKCASCINSVESSIKDLHGVNSIMVSPLDGRAIIKYSPKFITAKNIKEAIEDSGFGVDELQEQEISVCRVRIKGMACTSCSESVENALRMIDGVKKATVGLALEEAKVYFDPNLADANKIIEAIEDAGFGAELISSANDVNKVHLKLEGVDSLEDVNIVMSSLEFAAGVNHVEFNLTEHIVTVNYEPDITGPRSLIHFIQTASSGTKMYQASLHTTSGKRERDKVDEIHRYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYKIHHMLTLGLFLRWILSTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSVYILIKALTSDTFQGQDFFETSSMLISFILLGKYLENLAKGKTSDALGKLTQLVPDKAYLVDMDADENVISETEIDTQLIQKSDILKIVPGAKIPIDGVVIKGQSYVNESMITGEAKPVDKSPGDKVIGGTINENGCLLIKATHVGSDTALSQIVQLVETAQLAKAPVQKLADHISRVFVPLVVVAAFLTWMGWFVPGEVGLYPRHWIPKAMNAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKVVVFDKTGTLTVGKPVVVSAVLFSDFTMEEFYDMTIAVESSSEHPLAKAVVKHAKKLRKKFGSNDEEVPDVKDFEVQVGAGVCGKVGERTVLVGNKRLMHACNVPLSSEVERYMSENEILARTCVLVSIDGKIAGAYSVTDPLKPEAKRVISFLHTMGISSIIATGDNLATATAIANEVGIDEVFAETDPLGKADKVKELQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLVKNSLEDVITAIDLSRKTMLRIRLNYIWALGYNVLGMPVAAGVLYPFTGIRLPPWLAGACMAASSVSVVSSSLLLQLYKKPLNVQCI* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0844 952 ProSiteProfiles Heavy-metal-associated domain profile. 97 163 IPR006121 GO:0046872
Amo19g0844 952 SUPERFAMILY Calcium ATPase, transmembrane domain M 376 616 IPR023298 -
Amo19g0844 952 PANTHER ATP7, ISOFORM B 15 949 - -
Amo19g0844 952 CDD HMA 25 87 IPR006121 GO:0046872
Amo19g0844 952 Gene3D - 96 170 - -
Amo19g0844 952 Gene3D - 392 514 - -
Amo19g0844 952 CDD HMA 100 162 IPR006121 GO:0046872
Amo19g0844 952 Pfam E1-E2 ATPase 423 602 - -
Amo19g0844 952 PRINTS P-type cation-transporting ATPase superfamily signature 854 866 - -
Amo19g0844 952 PRINTS P-type cation-transporting ATPase superfamily signature 778 788 - -
Amo19g0844 952 PRINTS P-type cation-transporting ATPase superfamily signature 756 767 - -
Amo19g0844 952 PRINTS P-type cation-transporting ATPase superfamily signature 460 474 - -
Amo19g0844 952 PRINTS P-type cation-transporting ATPase superfamily signature 624 638 - -
Amo19g0844 952 PRINTS P-type cation-transporting ATPase superfamily signature 831 850 - -
Amo19g0844 952 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 337 940 IPR027256 GO:0006812|GO:0016021|GO:0019829
Amo19g0844 952 SUPERFAMILY HMA, heavy metal-associated domain 20 90 IPR036163 GO:0046872
Amo19g0844 952 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 377 908 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo19g0844 952 CDD P-type_ATPase_Cu-like 265 927 - -
Amo19g0844 952 Pfam haloacid dehalogenase-like hydrolase 620 845 - -
Amo19g0844 952 Gene3D - 635 764 IPR023299 GO:0000166
Amo19g0844 952 SUPERFAMILY HMA, heavy metal-associated domain 167 234 IPR036163 GO:0046872
Amo19g0844 952 ProSiteProfiles Heavy-metal-associated domain profile. 172 238 IPR006121 GO:0046872
Amo19g0844 952 ProSiteProfiles Heavy-metal-associated domain profile. 23 89 IPR006121 GO:0046872
Amo19g0844 952 SUPERFAMILY Calcium ATPase, transduction domain A 425 510 IPR008250 -
Amo19g0844 952 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 15 949 - -
Amo19g0844 952 SFLD Haloacid Dehalogenase 606 883 - -
Amo19g0844 952 SUPERFAMILY HMA, heavy metal-associated domain 94 165 IPR036163 GO:0046872
Amo19g0844 952 SUPERFAMILY HAD-like 622 937 IPR036412 -
Amo19g0844 952 ProSitePatterns Heavy-metal-associated domain. 102 131 IPR017969 GO:0046872
Amo19g0844 952 SFLD p-type atpase 606 883 IPR044492 -
Amo19g0844 952 Gene3D - 17 88 - -
Amo19g0844 952 TIGRFAM TIGR00003: copper ion binding protein 100 160 IPR006122 GO:0005507
Amo19g0844 952 TIGRFAM TIGR00003: copper ion binding protein 25 87 IPR006122 GO:0005507
Amo19g0844 952 Gene3D - 615 881 IPR023214 -
Amo19g0844 952 ProSitePatterns E1-E2 ATPases phosphorylation site. 626 632 IPR018303 -
Amo19g0844 952 Pfam Heavy-metal-associated domain 26 85 IPR006121 GO:0046872
Amo19g0844 952 Pfam Heavy-metal-associated domain 99 159 IPR006121 GO:0046872
Amo19g0844 952 PRINTS Copper-transporting ATPase 1 signature 23 48 - -
Amo19g0844 952 PRINTS Copper-transporting ATPase 1 signature 120 141 - -
Amo19g0844 952 PRINTS Copper-transporting ATPase 1 signature 49 72 - -
Amo19g0844 952 PRINTS Copper-transporting ATPase 1 signature 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0844 Amo-Chr19 13769998 13785681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0844 18 946 Primary Pumps ATPases AT1G63440 56.290 0.0 1057
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0844 K17686 - gmx:100793894 1564.28