Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0840 ATGGACGAAGATCTCGACTTGCCGATGGCGGAGCCTATGAACGACGACTTCGACTTCGCCGGCGGCGGCGGCGTCGGAATGGACGACGATTTCCCCGTTCTCAAGGTCGGAGAGGAGAAGGAAATTGGCAAGCTTGGATTGAAGAAGAAGCTCCTTAAAGAAGGTGAAGGATGGGAGAATCCTGAAGCCGGTGATGAAGTCCAAGTTCACTATACCGGGACTCTGCTTGATGGCACCAAGTTTGATTCCAGCAGAGATAGGGGAGCCCCTTTCACGTTCACACTTGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAGAAGCATGAAGAAAGGTGAAAATGCCCTTTTCACCATCCCACCTGAGCTAGCTTATGGTGAATCCGGTTCTCCTCCCACAATTCCGCCCAAAGCAACTCTTCAATTTGATGTTGAGCTGTTGTCTTGGACTAGTGTGAAGGACATATGTAAGGATGGTGGTTTGTTTAAGAAGATACTTGTTGAGGGAGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTTCTGGTTAATTATGAGGCACGCCTTGAAGATGGAACACTTGTAAAGAAATCTGATGGGGTAGAGTTCACAGTAGAAGACGGTCACTTTTGCCCTGCATTGTCAAAGGCCATCAAAACAATGAAGAAGGGGCAAAAAGTAATTTTGACTGTAAAGCCACAATATGGATTTGGCGAGAAGGGTAAGCCAGCCCATGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCTGATTACTCTTGAGTTAGTCTCTTGGAAGACAGTGACCAATGTAACTGATGACAAGAAGGTCATGAAAAAGATCCTTACTGAAGGAGAAGGATATGAGCGTCCCAATGAGGGATCCATTGTGAAATTGAAACTTACTGGTAAGCTGCACGATGGCACTATTTTTGTGAAGAAGGGCCATGATGGTGAAGGGGAACTACTTGAATTCAAAACAGATGAGGAGCAAGTAATTGAGGGGCTTGATAAGGCCATGTTGACGATGAAGAAGGGCGAGGTAGCACTGTTGACTATTGCTCCTGAGTATGCGTTTGGTTCATCAGAATCCAAGCAAGAATTGGCAGTTGTTCCACCTGACTCCACTGTGTATTATGAGGTTGAATTAGTATCTTTTGTGAAGGATAAGGAATCTTGGGACATGGAAACTCCAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCACTGTTTAGAGCTGGTAAATATGCAAAAGCTTCTAAAAGATATGAGAAGGCTATTAAGTTCGTAGAATATGATACCAACTTCAGCATTGAAGAGAAGAAGAGTGCCAAGGACTTGAAGATTGCTTGCAACTTGAATGATGCAGCTTGCAAGTTGAAGTTGAAAGATTATAAACAAGCAGAGAAATTGTGTACAAAGGTTTTGGACCTTGAGAGCACAAATGTGAAAGCACTCTATAGAAGAGCACAAGCATATATCCAGTTAGCTGACTTGGATTTGGCAGAATTTGATATCAAGAAAGCACTTGAGATTGACCCTAATAACAGGTATATTTTCTGTTTGCAATTTACTTAG 1599 0.434 MDEDLDLPMAEPMNDDFDFAGGGGVGMDDDFPVLKVGEEKEIGKLGLKKKLLKEGEGWENPEAGDEVQVHYTGTLLDGTKFDSSRDRGAPFTFTLGQGQVIKGWDEGIRSMKKGENALFTIPPELAYGESGSPPTIPPKATLQFDVELLSWTSVKDICKDGGLFKKILVEGEKWENPKDPDEVLVNYEARLEDGTLVKKSDGVEFTVEDGHFCPALSKAIKTMKKGQKVILTVKPQYGFGEKGKPAHGDEGAVPPNATLLITLELVSWKTVTNVTDDKKVMKKILTEGEGYERPNEGSIVKLKLTGKLHDGTIFVKKGHDGEGELLEFKTDEEQVIEGLDKAMLTMKKGEVALLTIAPEYAFGSSESKQELAVVPPDSTVYYEVELVSFVKDKESWDMETPEKIEAAGKKKEEGNALFRAGKYAKASKRYEKAIKFVEYDTNFSIEEKKSAKDLKIACNLNDAACKLKLKDYKQAEKLCTKVLDLESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPNNRYIFCLQFT* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0840 532 ProSiteProfiles TPR repeat profile. 490 523 IPR019734 GO:0005515
Amo19g0840 532 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 297 390 IPR001179 GO:0003755
Amo19g0840 532 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 291 387 IPR001179 GO:0003755
Amo19g0840 532 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 175 266 IPR001179 GO:0003755
Amo19g0840 532 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 59 149 IPR001179 GO:0003755
Amo19g0840 532 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 389 525 - -
Amo19g0840 532 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 64 152 IPR001179 GO:0003755
Amo19g0840 532 PANTHER PEPTIDYLPROLYL ISOMERASE 13 276 - -
Amo19g0840 532 Pfam Tetratricopeptide repeat 490 523 IPR001440 GO:0005515
Amo19g0840 532 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 278 389 - -
Amo19g0840 532 Gene3D - 156 269 IPR046357 GO:0003755
Amo19g0840 532 Gene3D Tetratricopeptide repeat domain 393 529 IPR011990 GO:0005515
Amo19g0840 532 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 180 269 IPR001179 GO:0003755
Amo19g0840 532 SUPERFAMILY TPR-like 397 528 IPR011990 GO:0005515
Amo19g0840 532 SUPERFAMILY FKBP-like 46 157 - -
Amo19g0840 532 SMART tpr_5 490 523 IPR019734 GO:0005515
Amo19g0840 532 SMART tpr_5 407 440 IPR019734 GO:0005515
Amo19g0840 532 SMART tpr_5 456 489 IPR019734 GO:0005515
Amo19g0840 532 SUPERFAMILY FKBP-like 275 407 - -
Amo19g0840 532 Gene3D - 39 155 IPR046357 GO:0003755
Amo19g0840 532 Gene3D - 270 392 IPR046357 GO:0003755
Amo19g0840 532 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 13 276 - -
Amo19g0840 532 SUPERFAMILY FKBP-like 156 271 - -
Amo19g0840 532 PANTHER PEPTIDYLPROLYL ISOMERASE 278 389 - -
Amo19g0840 532 PANTHER PEPTIDYLPROLYL ISOMERASE 389 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0840 Amo-Chr19 13722109 13725762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0840 34 526 Calmodulin-binding Proteins AT3G25230 79.919 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0840 K09571 - gmx:100803189 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g1154 04 51905885 51909095 Amo19g0840 19 13722109 13725762 PCT
Amo19g0840 19 13722109 13725762 Amo04g1154 04 51905885 51909095 PCT