Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0831 ATGGAAAACCAATTCTTTCTGAATGGTGGCATGTCCCATCACCAGCACCATCCAATTCATCAGTTTGAAACGGCTTCAATGCAAACAACATGGCGTCATCATTCGTCATCATCATCATCCATGGAAATTCATCAACAAAATAATGTTGCAAATTGCTCACCTGAGAATAATAATCACCAAAACCAAGATTCCTTCTACAACAACAACAACAACACCGATCATAACAACCTTCAATTTGACTCCTCAGCTTTGAGCTCAATGGTTTCATCTCCATCAACAGCAGCACCGAATTTCAACATGATCCAAAACGACAACAGTTTCGTCATAAGAGAACTCATCGGAAAATTAGGAACAATTGGAGGAAGCTCCGCTGAGATCTCGCCACATTCTCAAACCGTCGCTCTTTACAACAACAATAACACTACTCCTTCTTCGTCGTGTTATAGCACGCCGTTGAACTCTCCTCCGAAGCTCAACATGCCGAAACCGCCGCCACCGTCATCATCAATGGCTCTGAATTCAGCAACCGTCGCTGAATTCTCAGCTGATCCTGGTTTCGCTGAAAGAGCCGCCAAGTTCTCTTGCTTCGGAAGCAGAAGCTTCAATGGAAGAACAACCACAACAACAACAACAACCACTACTACTTCTCCATTAGTCATGATAAACAATCACAACAACAACAATGGCGCAGAGTTGACTCATCAGAGATCTAATCCAATTCATCGAGTCTCGAGTAGTCCATCGCTGAAATCGCTTGGATCTCAAATGGAGAAGATTTGTTCTTCTCCTTTAGAAATGGCTGCGAATTCTTCTCAAGAGGAATCTACAATTTCAGAGCAGAATCCAAATGTGGAAGGTGCTGCTTTGAAAATCGCTTCTTCTTCTGACATGAGTTCAAGGAAAAGGAAAGGTTCTTCCAGAGCAAAAGCCAAAGACTCTACCAAGGGAGGTGAAGGTAGTGAAGAGTCAAATGCAAAGAGGAGCAAGGGAAATGAAGGTGAAGGAAATGAGAATAATGGGAGAGTGAAGGTAGAAGAAGAATCCAAAGGAGAAGAGAAACAACAACAGAACAACAAGAGTAACAACTCAAAGCCTCCAGAGCCACCAAAGGACTACATTCATGTCAGAGCCAGAAGAGGCCAAGCCACTGACAGCCACAGTCTTGCAGAACGTGTAAGGAGAGAGAAAATTAGTGAGAGAATGAAGCTTCTCCAAGATCTTGTACCAGGCTGCAATAAGGTCACTGGCAAAGCACTTATGCTTGATGAAATCATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTCCTGTCTATGAAATTGGCTTCTGTTAACACAAGAATGGATCTTAGCATTGAGAACATTGTTCCAAAAGATATATTTCAATCAAATCATTCATTGGCACACCCAATTTTCCCAATAGATTCGTCAGCAACACCCTTTTATGGCCACCAATCCCAGCAAAACCCAGTTATCCACAATAACATTCCTAATGGTTCTTTGCCCCACAATTCAGTGGACCCATTAGATTCTGCTTTGTGCCAAACTCTTGGCATGCAATTACCTCAACTAAATGCCTTTAATGAAATTGGATCTCAGTATCCATTAACTTTCTGTGAGGATGACCTCCACACCATTGTTCAAATGGGATTTGGCCAAACTTCAAACAGGACAACACCAATTCATTCCCCAAGTTTCGACGGTTCAAATCAAGTATCACAAATGAAAGTTGAGCTCTAA 1743 0.4217 MENQFFLNGGMSHHQHHPIHQFETASMQTTWRHHSSSSSSMEIHQQNNVANCSPENNNHQNQDSFYNNNNNTDHNNLQFDSSALSSMVSSPSTAAPNFNMIQNDNSFVIRELIGKLGTIGGSSAEISPHSQTVALYNNNNTTPSSSCYSTPLNSPPKLNMPKPPPPSSSMALNSATVAEFSADPGFAERAAKFSCFGSRSFNGRTTTTTTTTTTTSPLVMINNHNNNNGAELTHQRSNPIHRVSSSPSLKSLGSQMEKICSSPLEMAANSSQEESTISEQNPNVEGAALKIASSSDMSSRKRKGSSRAKAKDSTKGGEGSEESNAKRSKGNEGEGNENNGRVKVEEESKGEEKQQQNNKSNNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIENIVPKDIFQSNHSLAHPIFPIDSSATPFYGHQSQQNPVIHNNIPNGSLPHNSVDPLDSALCQTLGMQLPQLNAFNEIGSQYPLTFCEDDLHTIVQMGFGQTSNRTTPIHSPSFDGSNQVSQMKVEL* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0831 580 MobiDBLite consensus disorder prediction 225 283 - -
Amo19g0831 580 MobiDBLite consensus disorder prediction 556 580 - -
Amo19g0831 580 CDD bHLH_AtBPE_like 371 456 - -
Amo19g0831 580 MobiDBLite consensus disorder prediction 143 171 - -
Amo19g0831 580 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 379 450 IPR036638 GO:0046983
Amo19g0831 580 MobiDBLite consensus disorder prediction 26 78 - -
Amo19g0831 580 PANTHER BHLH TRANSCRIPTION FACTOR 2 573 - -
Amo19g0831 580 Gene3D - 378 453 IPR036638 GO:0046983
Amo19g0831 580 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 381 431 IPR011598 GO:0046983
Amo19g0831 580 Pfam Helix-loop-helix DNA-binding domain 385 432 IPR011598 GO:0046983
Amo19g0831 580 Coils Coil 428 448 - -
Amo19g0831 580 SMART finulus 387 437 IPR011598 GO:0046983
Amo19g0831 580 MobiDBLite consensus disorder prediction 296 354 - -
Amo19g0831 580 MobiDBLite consensus disorder prediction 225 372 - -
Amo19g0831 580 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 573 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0831 Amo-Chr19 13632671 13636133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0831 79 534 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.534 6.12e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g0831 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0831 - - gmx:100812081 540.806