Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0807 ATGGAGACGTGGAGCTCTGAATTTTTGTTGACCTCTCAGAGTGACGATTTGATTCAGATTGTTGAGTTTTCTGATTCAGTGTGTTTTATAGGTAGTTGCTGGGCATTCTCCTCCACTGGGGCCATAGAAGGGATAAATGCAATAGTAACTGGGGACCTTATAAGCCTTTCAGAACAAGAACTTGTGGATTGTGACAAAACTAATGATGGATGTGAGGGAGGGAGGGGAAAACAAAGTGTTAGCCTTGATGGCTACATGATGTGGCAAAATCGATTCTTTGCTCCTTCTGTGGCTATTGGCATCTATGATGGAGATTGCTCAAGTAACCCAGATGATATTGACCATGCAATATTAATAGTGGGATATGGATCAGAGGGTGATGAAGATTACTGGATATGGATCAAAGGAAATGAAACAACAGGTGCTGTGATTACTTGGAATAGCAAATCATCTGATAAAGGCCCTGATGGCCAAACATTGGGAACCTATGGTTCAGCAACTGTTGGATTGATTCTGATTTTTTCTGTGCCTCCCAGGTCAGTTTTGAGAATATGTAACAAAACTTTAATTTGGTTTGTTTCAGAATTCACAGTGGCACTGAGGGTAAACAGTAATAGAGCCATGTTCTATAAAGTTAAGATCAAAGGAACACAGGACACTCTCTTAGACAACACAGGAACAGTCATGTTTGGCAGTGCTAAATCACTCTATGAGGTATCAATAGCATTATTTACTCTTTTCATTTCCTAG 750 0.4013 METWSSEFLLTSQSDDLIQIVEFSDSVCFIGSCWAFSSTGAIEGINAIVTGDLISLSEQELVDCDKTNDGCEGGRGKQSVSLDGYMMWQNRFFAPSVAIGIYDGDCSSNPDDIDHAILIVGYGSEGDEDYWIWIKGNETTGAVITWNSKSSDKGPDGQTLGTYGSATVGLILIFSVPPRSVLRICNKTLIWFVSEFTVALRVNSNRAMFYKVKIKGTQDTLLDNTGTVMFGSAKSLYEVSIALFTLFIS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0807 249 Pfam Papain family cysteine protease 31 79 IPR000668 GO:0006508|GO:0008234
Amo19g0807 249 Pfam Papain family cysteine protease 100 132 IPR000668 GO:0006508|GO:0008234
Amo19g0807 249 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 113 123 IPR025660 -
Amo19g0807 249 SUPERFAMILY Pectin lyase-like 130 230 IPR011050 -
Amo19g0807 249 Gene3D Cysteine proteinases 26 79 - -
Amo19g0807 249 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 100 132 - -
Amo19g0807 249 Gene3D - 131 238 IPR012334 -
Amo19g0807 249 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 26 75 - -
Amo19g0807 249 SUPERFAMILY Cysteine proteinases 30 132 IPR038765 -
Amo19g0807 249 PANTHER PROBABLE THIOL PROTEASE-RELATED 26 75 - -
Amo19g0807 249 PANTHER PROBABLE THIOL PROTEASE-RELATED 100 132 - -
Amo19g0807 249 SMART pept_c1 11 146 IPR000668 GO:0006508|GO:0008234
Amo19g0807 249 Gene3D Cysteine proteinases 80 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0807 Amo-Chr19 12836007 12838212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0807 131 238 Carbohydrate Esterase AT5G55590 34.921 3.16e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0807 - - adu:107468232 137.502