Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0791 ATTAGAAGTTTGAATTTGTCTTCATGGATTCCAGTAGATTCACCATGCTTGTTGGAGCATATAATTCTACCTGTGGAATTTGGATTCTTTCTGATATTGTTATTCCAACTTSTGAGGAAAAATTTGAACTTCATCAACAAGCAGAACAAAATCCCCTCAGATATGATTCATCAAACTATAACAACAAACCATGGTTTAGCTTACAAAATCAGCATAGTTCTCACCACTTTGATGGTAGCTCTTCATGCAGCAACTCTATCACTYATCATTTTCAATCATGAGACTCAATGCACTTCAAAATTCAAGGCTATTGCATCAGAAACAATTCAAGTTCTATCATGGGGTGYGAGTCTAATTGCAATTTTCAAGGTATCAAGAACAAGTTCTTATTTTCCTTGGATTCTCAGAGCTTGGTGGATTTGTAGTTTCATTTTGTGCATTGTTGGAACATCACTTCATACAATATTSAGTGTTAGCCAAAAGGGTCAAATTGGTTTAAGAGAATATGCAGATTTCATTGGTTTGGTTACTTCAACATTCTTATTGATTGTTTCAATTAGAGGGAAGAGTGACATTGTGTKWGTTCAAAAAAAAGGTTACAAGAARCCTCTTGAGCAAAGTGACATTCCTAATGTTGATATCAAGGACTCGGCCGAGTTTCTAACCTCGGCCTTCGACGAGAGCCTTAGGCAGGTAAAGGAGAAAGATGGAACTACAAACCCCTCTATTTACAAGGCAATCTATCACTTCACCAGGAAGAAAGCAGCAATCAATGCGCTTTTCGCCATAATATGCGCTTCGGCTTCATATGTTGGTCCATACTTGATCACTGACTTTGTTGATTTCTTGGGGGACAAGGAAAAGCAGGGGTTGAAAACAGGGTATCTTCTTTCACTAGCATTCTTGTGTGCTAAGATGGTTGAGACAATAACTCAGAGGCAATGGATTTTCGGYGCAAGGCAATTAGGCCTTCGCCTTAGATCTGCATTGATATCTCATATATATAAGAAGGGTCTGCATCTTTCGAATAGATCGCGACAAAGTCACACAGGCGGCGAGATAATGAACTATATGAGTGTTGATGTGCAGAGAATCACAGATTTCATTTGGTATGTYAATGTGATTTGGATGCTTCCTATACAAATTTCTTTAGCAGTGCTCATTTTGCATACAAATCTTGGATTAGGCTCTATGGCCGCGCTAGCCGCGACTCTAGCAGTGATGACTCTGAACATACCTCTTACCAAAATACAGAAAAGATACCAAGCAAAGATCATGGCAGCCAAAGATGAAAGAATGAAAGCAACTTCAGAAGTTCTGAGAAACATGAAAACTTTGAAGCTTCAAGCATGGGATAGTGAATTTCTTCAAAGGCTAGAATCATTGAGGAAAGTGGAGTATAATTGGTTACTGAAATCAYTACAACAAGCAGCACTTTCTGCTTTTATCTTCTGGGGATCACCTACATTCATATCTGTGATAACCTTTTGGGCTTGTATGCTAATGGGAATCGAGCTAACGGCCRGAAGAGTCTTATCCGCATTCGCCACATTTAGAATGTTACAGGATCCTATTTTCAGCCTACCTGATTTACTCAATGTCATGGCTCAAGGGAAAGTTTCRGTTGATAGGATCGCTTCGTACCTTAGGGAGGAAGAAATCCAGCATGATGTCATTGAAAATGTATCAAGGGACAAAACAGAATTTGATGTAGTCATTGATAAAGGGAGATTCAGCTGGGATCCAGAGTCTAGAACTCCATCTATTGATCAAATAGAGTTGAAAGTTAAAAGAGGAATGAAGGTGGCGATTTGTGGATCGGTTGGTTCTGGAAAATCAAGCCTGCTGTCTGGTATTTTGGGAGAGATATATAAGCAATCCGGGAAAGTGAAGATCAGTGGAACCAAAGCTTATGTTCCACAGTCTCCATGGATTCTTACAGGGAATATTAGAGACAATATCACATTTGGAAAAGAGTATGATCCTGAAAAGTATGAGAAAACTGTCCAAGCTTGTGCATTRAAGAAGGACTTTGAGCTATTCTCTTGTGGTGATCTCACTGAGATTGGRGAAAGAGGGATCAACATGAGTGGTGGACAAAAGCAGAGGATTCAGATAGCGCGAGCCGTWTACCAAGATGCTGATATATATCTTCTTGATGACCCTTTTAGCGCCGTCGATGCACATACCGGAACACACCTATTTAARGAGTGTCTTATGGGGATTCTTAAAGAGAAAACCATACTTTTTGTTACACACCAAGTTGAATTTCTTCCAGCAGCAGATCTCATCCTGGTGATGCAAAATGGAAAAATTACACAAGCTGGAAAATTTGAAGAGCTTCTAAAGCAAAACATAGGATTTGAAGTCTTAGTTGGTGCTCATAGTAAAGCTCTCGAGTCRATTCTCACTGTCGAAAACTCAAGCAGAACAGCTCAAAATCCCATAGCTGAAGCAGAATCCAACTYAAATGYGAAACTCATGCACAAAGAACAGCATGACACAGTGGAAGATAATCCACCAGAGAGRAAAGGAAATGAAGGAAAATTGGTKCAAGATGAAGAAAGAGAAACAGGAAGCATATCAAAAGAAGTRTACTGGACTTATTTGACAACTGCRAAAGGAGGAGCATTGGTTCCGGTTATAATCTTAGCACAATCTTCATTCCAAATACTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTACAAGTAGTGATGCTAAGCCTATATTTGACATGAATTTCATACTTCTTATTTACATGGYTCTTTCTGTTTCYGGCGCGCTATGTGTTCTGGTGCGAGCCTTGTTGGTYGCATACACYGGCCTTTGGACAGCACAGACATTTTTCACAAGCATGCTGCATAGTGTGCTTAGAGCTCCAATGTCATTCTTTGATTCAACACCAACTGGAAGAATCTTGAACAGGGTCTCTACAGATCAAAGTATTCTAGATTTGGAGATGGCAACCAAATTAGGATGGTGTGCTTTCTCTGTAATACAAATTCTGGGAACTATTGCAGTGATGTCTCAGGTGGCATGGCAAGTTTTCGCCATTTTCATTCCGAGATATTACACACCAACAGCAAGAGAACTGGCTCGCTTAGCACAGATACAAATTGCACCAATCCTCCACCATTTTGCAGAATCTTTAGCCGGAGCRGCKTCGATACGAGCTTTCGATCAAGAAGGCAGATTCATACAYACAAATCTTGATCTTGTGGATGGCCATGCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAAYATACTTTCAAATTTTGTTTTTGCCTTCTCACTTGTTATGCTTGTGAGCCTCCCTGAAGGAATAATCAATCCAACAAAAGTGATATATAATATATACTATATATATATATACTATTATATATATAATTTTATTATTGTTATTATTGTTATTTTTATTATCAGCACTGTTAGGGGCAACTTGGACCCCTTGGAACTATACTCTGACACTCAAATCTGGGAGGCACTAGATAAATGTCAACTTGGTCAGCTAGTGAGGGAAAAGCAAGACAAGTTGGATAGCCCAGTGGTAGAAAATGGTGAGAATTGGAGTGTGGGACAAAGGCAACTATTTTGCCTAGGAAGAGCATTGCTGAAGAGAAGCAGCATATTAGTTCTTGATGAAGCAACTGCCTCTGTGGACTCTGCAACTGATGGGGTGATACAGCAGATCATCAGTCACGAGTTTAAAGATCGGACCGTCGTCACAATTGCTCATCGTATCCACACGGTTATAGACAGTGATCTTGTTTTGGTGCTCAGTGATGGGAGAATCGCCGAGTATGATGAGCCGTCGAAGTTACTTGAAAGAGAAGATTCCTTCTTCTATAAACTCATAAAGGAGTATTCAAGCAGATCAAGTGGCTTCAACAGCTTAGCAGCTCAACATGTTCAAAGCTAG 3954 0.395 IRSLNLSSWIPVDSPCLLEHIILPVEFGFFLILLFQLXRKNLNFINKQNKIPSDMIHQTITTNHGLAYKISIVLTTLMVALHAATLSLIIFNHETQCTSKFKAIASETIQVLSWGXSLIAIFKVSRTSSYFPWILRAWWICSFILCIVGTSLHTIXSVSQKGQIGLREYADFIGLVTSTFLLIVSIRGKSDIVXVQKKGYKKPLEQSDIPNVDIKDSAEFLTSAFDESLRQVKEKDGTTNPSIYKAIYHFTRKKAAINALFAIICASASYVGPYLITDFVDFLGDKEKQGLKTGYLLSLAFLCAKMVETITQRQWIFGARQLGLRLRSALISHIYKKGLHLSNRSRQSHTGGEIMNYMSVDVQRITDFIWYVNVIWMLPIQISLAVLILHTNLGLGSMAALAATLAVMTLNIPLTKIQKRYQAKIMAAKDERMKATSEVLRNMKTLKLQAWDSEFLQRLESLRKVEYNWLLKSLQQAALSAFIFWGSPTFISVITFWACMLMGIELTAXRVLSAFATFRMLQDPIFSLPDLLNVMAQGKVSVDRIASYLREEEIQHDVIENVSRDKTEFDVVIDKGRFSWDPESRTPSIDQIELKVKRGMKVAICGSVGSGKSSLLSGILGEIYKQSGKVKISGTKAYVPQSPWILTGNIRDNITFGKEYDPEKYEKTVQACALKKDFELFSCGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGKITQAGKFEELLKQNIGFEVLVGAHSKALESILTVENSSRTAQNPIAEAESNXNXKLMHKEQHDTVEDNPPERKGNEGKLVQDEERETGSISKEVYWTYLTTAKGGALVPVIILAQSSFQILQIASNYWMAWVCPTSSDAKPIFDMNFILLIYMXLSVSGALCVLVRALLVAYTGLWTAQTFFTSMLHSVLRAPMSFFDSTPTGRILNRVSTDQSILDLEMATKLGWCAFSVIQILGTIAVMSQVAWQVFAIFIPRYYTPTARELARLAQIQIAPILHHFAESLAGAASIRAFDQEGRFIHTNLDLVDGHARPWFHNVSAMEWLSFRLNILSNFVFAFSLVMLVSLPEGIINPTKVIYNIYYIYIYYYIYNFIIVIIVIFIISTVRGNLDPLELYSDTQIWEALDKCQLGQLVREKQDKLDSPVVENGENWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVIQQIISHEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSKLLEREDSFFYKLIKEYSSRSSGFNSLAAQHVQS* 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0791 1317 Gene3D ABC transporter type 1, transmembrane domain 842 1148 IPR036640 GO:0005524|GO:0016021
Amo19g0791 1317 Gene3D ABC transporter type 1, transmembrane domain 227 555 IPR036640 GO:0005524|GO:0016021
Amo19g0791 1317 ProSitePatterns ABC transporters family signature. 696 710 IPR017871 GO:0005524
Amo19g0791 1317 PANTHER - 1151 1307 - -
Amo19g0791 1317 Gene3D - 567 797 IPR027417 -
Amo19g0791 1317 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 198 1124 - -
Amo19g0791 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 787 IPR027417 -
Amo19g0791 1317 SMART AAA_5 598 771 IPR003593 -
Amo19g0791 1317 CDD ABC_6TM_ABCC_D2 879 1120 IPR044726 GO:0140359
Amo19g0791 1317 Coils Coil 418 438 - -
Amo19g0791 1317 Pfam ABC transporter 1154 1229 IPR003439 GO:0005524
Amo19g0791 1317 PANTHER - 198 1124 - -
Amo19g0791 1317 CDD ABC_6TM_ABCC_D1 257 545 IPR044746 GO:0140359
Amo19g0791 1317 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1030 1298 IPR003439 GO:0005524
Amo19g0791 1317 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 256 537 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0791 1317 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 571 794 IPR003439 GO:0005524
Amo19g0791 1317 SUPERFAMILY ABC transporter transmembrane region 252 553 IPR036640 GO:0005524|GO:0016021
Amo19g0791 1317 Pfam ABC transporter transmembrane region 257 503 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0791 1317 Pfam ABC transporter transmembrane region 890 1122 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0791 1317 Pfam ABC transporter 590 723 IPR003439 GO:0005524
Amo19g0791 1317 PANTHER - 104 195 - -
Amo19g0791 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1152 1296 IPR027417 -
Amo19g0791 1317 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 881 1115 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0791 1317 CDD ABCC_MRP_domain1 571 771 - -
Amo19g0791 1317 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1151 1307 - -
Amo19g0791 1317 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 104 195 - -
Amo19g0791 1317 MobiDBLite consensus disorder prediction 827 854 - -
Amo19g0791 1317 Gene3D - 1149 1300 IPR027417 -
Amo19g0791 1317 SUPERFAMILY ABC transporter transmembrane region 866 1150 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0791 Amo-Chr19 12438864 12473088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0791 559 815 Calmodulin-binding Proteins AT2G36910 28.777 3.86e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0791 - - gmx:100817486 1773.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0791 19 12438864 12473088 Amo19g0791 19 12438864 12473088 ECH
Amo19g0791 19 12438864 12473088 Amo02g0096 02 1098215 1110161 hybridization
Amo19g0791 19 12438864 12473088 Amo16g3137 16 134668403 134670201 PCT