Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0767 ATGTTTAATATACTGAGAAAAAACACTTCACTATTAACACCTACACTTACGTTTTTCATCATTCTTCATCGCGCCTCCAACCTTAACCCCAGAACTTCATCGCGCTTCCAACCCCTGCTTCGGTGCTCCCTACATCGGCTCTCCCTCCATTGGCGCTCCCTCTATCGGCGCTCCCTTCGTCTCAAAGCCTCCATCTTGAACATTGATTGGTTTCAGAAACGACTCAATGAAAACGACGAGGTATTCTCATTATCAATGGGTGAAATGGGAACTGTGATTCTTGGTGCAAGGGAGTCTTGCAAATTCTTCCATGATCGTATAAAAGGCAAAAGGTCCAACACCAAGCTAAAAAAGATTTTTTCAGAGAACTTGTGTGAAATTTAA 384 0.4297 MFNILRKNTSLLTPTLTFFIILHRASNLNPRTSSRFQPLLRCSLHRLSLHWRSLYRRSLRLKASILNIDWFQKRLNENDEVFSLSMGEMGTVILGARESCKFFHDRIKGKRSNTKLKKIFSENLCEI* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0767 127 Pfam Whirly transcription factor 78 121 IPR013742 GO:0003697|GO:0006355|GO:0006952
Amo19g0767 127 Gene3D Transcriptional Coactivator Pc4; Chain A 62 124 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0767 Amo-Chr19 12099337 12102812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0767 63 119 Whirly Transcription Factor Family AT1G14410 46.552 8.90e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Amo19g0767 Whirly 5.7e-08 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0767 - - tcc:18610477 55.4546