Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0746 ATGGCTCTGGTGTGTGGTTCCGCGTCGGTGACGTTCCCTTCATCTTCTTTCCCACGTCACAGCCACAGGAATACCTCTTCCTCATTGGTTGGGTTACAATTTCCATTGCACAAGCTGGTATCCTTATCATTATCTCCCTCTTCTTCTTCTTCCAACACCAATGCAAGGATCCTCCGTATCCATTCTCAGCAGCAAGATTCTTCCCTCGTTCCTCCAGAACAAGATCCACGCTTCCTCTGCGTCGAACCCGAACCCCGATTCAAAGGCCCGGACATTTGGAACAAGACCTGGTATCCAAAAGCTGCCGATCATGTTAATACGGAGAAAACATGGTATGTTGTTGATGCTACAGACAAAGTTCTTGGCAGACTGGCATCAACGATTGCTATTCATATCCGAGGGAAAAATCTAGAAACCTATACTCCCAGCGTGGACATGGGTGCATTTGTAATTGTGGTGAATGCTGAAAAGGTTGCTGTATCTGGGAAAAAGAGAACCCAAAAGCTTTACAGGAGGCACTCTGGTAGACCTGGTGGTATGAAAGTAGAGACATTTGCTCAACTGCAGAACAGAATTCCTGAAAGAATTATCGAACATGCTGTTCGTGGCATGCTTCCGAAGGGGAGGCTTGGGAGGAGGCTATTCACCCACCTGAAGGTTTATGAGGGTCCAGATCATCCTCATGCTGCGCAGAAGCCCATCGAACTGCCAATTCAGGATAAGAGAATATATTTACAGAGATAG 744 0.4691 MALVCGSASVTFPSSSFPRHSHRNTSSSLVGLQFPLHKLVSLSLSPSSSSSNTNARILRIHSQQQDSSLVPPEQDPRFLCVEPEPRFKGPDIWNKTWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYEGPDHPHAAQKPIELPIQDKRIYLQR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0746 247 Pfam Ribosomal protein L13 109 227 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo19g0746 247 CDD Ribosomal_L13 111 224 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo19g0746 247 Hamap 50S ribosomal protein L13 [rplM]. 111 237 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo19g0746 247 ProSitePatterns Ribosomal protein L13 signature. 201 223 IPR023563 GO:0003735|GO:0005840|GO:0006412
Amo19g0746 247 PANTHER RIBOSOMAL PROTEIN L13 62 247 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo19g0746 247 PANTHER 50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE 62 247 - -
Amo19g0746 247 SUPERFAMILY Ribosomal protein L13 105 238 IPR036899 GO:0003735|GO:0005840|GO:0006412
Amo19g0746 247 TIGRFAM rplM_bact: ribosomal protein uL13 105 236 IPR005823 GO:0003735|GO:0005840|GO:0006412
Amo19g0746 247 Gene3D Ribosomal protein L13 100 243 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0746 Amo-Chr19 11611266 11614693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0746 113 246 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.915 3.80e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0746 K02871 - gmx:100305981 368.622