Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0634 ATGCCTCCGAGAACGGTGAAGCGTGGCGGCACTCCGGGAAGAAGGGGTGGAAGAGGAGGCCGGGGGCCCTCGAAGGCCGCGCAGAATCAGCAGCAGCAGCAGCCGAACCCTGAAGCTGTGGAGGAAGCGGGGAAGCTCGAGGAGAAGCCGATTATGGAGGATGAGCCAAAAGCCGAAGTGAACCCTGTTCTTGAAGAGAAACCTGTCGTTGTTGAAGAGGAGAAGCCCTTTGTTGAGGAACAAGCGATTGATATGAATCAAATGGCCCCTGAAGCTGTAGAAGAAGCAGCGACAACACACGTGCATAATGGATCAGCTGTGGCGAAAAACGAGGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACGGTTAGATTTGGAGGATAATGATCCCGAATATGAACCGGAGGAATATATTGCAGTTGATTATGATGAGAAGGAAATTGAACAAGACGAGGTTCATCAGGTGGTTGATGAAGTAGAGGAAGAAGCGGAGGATAATGGCGGTGAAGAAGAGGGTGACACAGGTGAGGAAGAAGTTGAAGATGTTCATGATGAAATTGAGGGTGAAGAAGATGAGGAGCATGCTGGAGATGAGCATGAGCATGCTGATTTGGTTGATGTGGAGGAAGAGGAACACCGTGAAGTTGTAAAGGAGAGAAAAAAGAGGAAAGAATTTGAAGTATTTGTTGGGGGCCTTGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTGTTCAGTGAAGTTGGGGTGGTCACTGAAGTCAGGCTGATGATGAATCCTCAGACTAAAAAAAATAAGGGATTTGCATTCCTGCGCTTTGAAACCGTGGAACAAGCTAAACGAGCTGTAGCAGAGCTCAAAAATCCAGTGATTAACGGAAAACAATGTGGTGTAACACCAAGTCAGGATAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAAAAGTTAAAGCATTATGGAGTTACAAATGTTGAGGATATAACACTAGTAGAAGATAGTAATGATGAAGGAAAGAACCGAGGATTTGCATTTTTGGAATTTTCCTCTCGGTCAGATGCTATGGATGCATTTAAACGACTTCAAAAGAGAGATGTTGTGTTTGGAGTAGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTCAAAACTGTTTTTATTGATGCACTCTCTCCTTCATGGGATGAAGATTATGTTCGGGATCTTCTTAAGAAATTTGGGGACCTAGAAAAGATTGAACTTGCCAGGAACATGCCAGCTGCCCGTAGGAAAGACTATGGATTTGTTACATTTGCCACACATGAGGCTGCAGTAAGATGTGCTGAAAGTATTAGCGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCAAAAGTTAGGGCTAGGTTGTCAAGACCACTTCAGAGAGGCCGTGGAAAACATATCAGTCGTGGGGACTACCGCCCTGGTCGTGGTTCTGCAACAATGGCCAGACCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCTCCCCCTCGCACGGTTAGGGGAATTGGAAGTCGTCTTCCACCAGTCAGGCCAGTTAGTGTGAGAGATAGACGTCCTATCATGTCAGTGCCAGTAAGAAGTAGGCCTGTGCCTCCTCCAGCCAGATCCTATGAGAGGAGACCTCCTCCTCCTACATATCCTAAAGTTAGTACGAAGAGAGATTATGTTCGACGTGAGGACATACCGCCTCCTAGAAGTAGAGTTGCTACAGATTATGGTTCAAGGATGGCCTCTGAAAGACGTCCATCATACAGGGATTATCCAGCCCGTGGTCCTGCATATTCTGATATTCCAAGAAGTACGGCTCGTGCTGCACCAAGGAGAGGTTACGTGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCCCCTCCGCCACCCTCTGCACACATGAGTTACCGTGAAGGACGACCCCGCGACTATGATGCTCTCTCTGGCTCAAAACGTTCTTATGCTTCCATTGATGATGTTCCTTCACGATATGCGGATACTAGTGCTCGTCAATCAAGAGCTCGTTTGGACTATGAATATGGTGGTAGTGGTTCTCAATATGGAGATGCTTATGGTGACAGGCTGGGAAGATCTAGTCTGGGGTATGGTGGAAGCAGCAGAAGTTCAATGTCTAGTCAGGATTCCCATGGGATGTATAGCAGTCGACAAGGCATGGGTTATGGTGGAGGTTCCTTTGGTAATAGTGATGTTGGTGGGATGTACTCATCAAGTTATGGTGGTGATTACATTTCACGAGGAAGTGATGTTGGAGGCAGCTCATACTCAACTATGTATTCTGGCAGGGGTGTGGGTGGTAGTAGCAGTTACATGGGTGGTGGAGGTGGCTCCGGCTCTTATTATTAG 2451 0.4684 MPPRTVKRGGTPGRRGGRGGRGPSKAAQNQQQQQPNPEAVEEAGKLEEKPIMEDEPKAEVNPVLEEKPVVVEEEKPFVEEQAIDMNQMAPEAVEEAATTHVHNGSAVAKNEEEEVKESIDEYEKDERLDLEDNDPEYEPEEYIAVDYDEKEIEQDEVHQVVDEVEEEAEDNGGEEEGDTGEEEVEDVHDEIEGEEDEEHAGDEHEHADLVDVEEEEHREVVKERKKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALSPSWDEDYVRDLLKKFGDLEKIELARNMPAARRKDYGFVTFATHEAAVRCAESISGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRPGRGSATMARPSWSRPAPRSFPPPRTVRGIGSRLPPVRPVSVRDRRPIMSVPVRSRPVPPPARSYERRPPPPTYPKVSTKRDYVRREDIPPPRSRVATDYGSRMASERRPSYRDYPARGPAYSDIPRSTARAAPRRGYVDDGYGQRFERPPPPPPSAHMSYREGRPRDYDALSGSKRSYASIDDVPSRYADTSARQSRARLDYEYGGSGSQYGDAYGDRLGRSSLGYGGSSRSSMSSQDSHGMYSSRQGMGYGGGSFGNSDVGGMYSSSYGGDYISRGSDVGGSSYSTMYSGRGVGGSSSYMGGGGGSGSYY* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0634 816 Gene3D - 311 393 IPR012677 -
Amo19g0634 816 MobiDBLite consensus disorder prediction 124 150 - -
Amo19g0634 816 SUPERFAMILY RNA-binding domain, RBD 231 375 IPR035979 GO:0003676
Amo19g0634 816 MobiDBLite consensus disorder prediction 24 38 - -
Amo19g0634 816 CDD RRM_SF 312 379 - -
Amo19g0634 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 308 IPR000504 GO:0003723
Amo19g0634 816 MobiDBLite consensus disorder prediction 93 221 - -
Amo19g0634 816 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 816 - -
Amo19g0634 816 PANTHER RNA RECOGNITION MOTIF 1 816 - -
Amo19g0634 816 CDD RRM_SF 232 303 - -
Amo19g0634 816 SUPERFAMILY RNA-binding domain, RBD 402 509 IPR035979 GO:0003676
Amo19g0634 816 MobiDBLite consensus disorder prediction 158 199 - -
Amo19g0634 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 378 IPR000504 GO:0003723
Amo19g0634 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 300 IPR000504 GO:0003723
Amo19g0634 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 409 474 IPR000504 GO:0003723
Amo19g0634 816 CDD RRM_SF 409 483 - -
Amo19g0634 816 MobiDBLite consensus disorder prediction 106 123 - -
Amo19g0634 816 MobiDBLite consensus disorder prediction 41 65 - -
Amo19g0634 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 394 IPR000504 GO:0003723
Amo19g0634 816 MobiDBLite consensus disorder prediction 489 699 - -
Amo19g0634 816 Gene3D - 397 514 IPR012677 -
Amo19g0634 816 MobiDBLite consensus disorder prediction 1 65 - -
Amo19g0634 816 Coils Coil 147 167 - -
Amo19g0634 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 407 489 IPR000504 GO:0003723
Amo19g0634 816 MobiDBLite consensus disorder prediction 730 749 - -
Amo19g0634 816 Coils Coil 105 128 - -
Amo19g0634 816 SMART rrm1_1 231 304 IPR000504 GO:0003723
Amo19g0634 816 SMART rrm1_1 408 483 IPR000504 GO:0003723
Amo19g0634 816 SMART rrm1_1 311 390 IPR000504 GO:0003723
Amo19g0634 816 MobiDBLite consensus disorder prediction 557 580 - -
Amo19g0634 816 MobiDBLite consensus disorder prediction 200 221 - -
Amo19g0634 816 MobiDBLite consensus disorder prediction 727 751 - -
Amo19g0634 816 MobiDBLite consensus disorder prediction 583 597 - -
Amo19g0634 816 Gene3D - 144 310 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0634 Amo-Chr19 9849806 9856389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0634 232 488 Eukaryotic Initiation Factors Gene Family AT1G49760 24.658 1.68e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0634 - - aprc:113850151 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0634 19 9849806 9856389 Amo19g0634 19 9849806 9856389 ECH
Amo19g0634 19 9849806 9856389 Amo14g3646 14 141164659 141170634 PCT