Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0625 ATGATGGCAAATCAAGACATTACTATTACTACCGACGATTATGAACCCAATAATTTAGTGTACGATGTTTTTCTTAGTTTCAGGGGTGAAGACACACGCTACTCTTTCACAGGTTTTCTCTACGATGCTCTGTTGAGGAAGGGAGTGAGAGTGTTCATGGATGATGAAGAGTTGAAGGGCGGGGACCGAATCGCGCAATCTCTGGTGAATGCGATCCAGCAATCAAGGATTTCGATTGTTGTTTTTTCTGAGAATTATGCAACTTCAAGGTGGTGTCTTGATGAACTAGTGGAGATCGTTGAGTGTATGGAGTTGAAGAAGCGATTGTTGGTTTGGCCAATCTTTTACAAAGTGGCACCGTCTGATGTGAGGCATCAGAGAAAGAGTTACGGTGAAGCCATGGCTGCACATGAAGAAAGGTTCGGAAATGGATCTGTTAAGGTCCAGAAATGGAGATCAGCTTTGTCTCAAGTTGCTAACTTGAAAGGATGGTCTTACCAAACAGGGTATGAATATGAATTTATACATGAGATTGTGAAAAGGGTCACTACTAAGTTACAACATGAACAATCTCGCATAGAAGAACTGAGGTCACTTTTAGACATTGAATCCCAAAGGACAGTTTGCATGCTAGGAATTTATGGAACAGGAGGAATCGGCAAAACAGCACTTGCCAAAGCTCTTTATAACACAATTATCCATAAATTTGAATGTTCAATCTTTCTTGAAGGTGTTAGAGAAAGATCAAACAGTTATATGGGTCTAGTAAATCTCCAAGAGGCTATTATATCTAAGCTATATGATGGGGAAATTATAAAGTTGGAGAATATTGATGATGGCATCATTAAGTTAAAAGATACATTGAAGCATAAGAGAGTTCTTTTGGTACTCGACGATGTTGATAGCGAGGATCAAATAAAAAATTTGGCTGGCGAGAGCAACTGGTTCGGTTCTGGGAGTAGAATCATCATAACAACGAGGGATAAACATGTGCTAAACATTGGTAACGTTGAAAAGAAATTCGAGATAAAGAGGTTACATGATCATGAAGCTCTTCAATTCTTTTGCTTAAAAGCTTTCAAAATGAATCATCCTTTACCCGAGTACAAAAATGTGTCTAATCATGTAGTTCATTATGCCAAGGGCCTTCCATTAGCTCTAAAAGTATTAGGGTCTCATTTTGCTAATAAATCTATAAGGGAATGTGAATGTGCATTGAAACAATTCAAGAGGATTCAACAGAGGAACATACATGACATACTCAAGGTCAGTTATGATTGCTTAGAAGATGCCACAAAGTGTGTATTTCTTGACATTGCTTGCTTCTTTAAAGGGGCTAGCTTGCAATATGTTGAGAATGTTTTGGAGAAATGTGACATTTTCCCATCATATAATATTGGAAGACTTGTTGATAAATCTCTGCTAGCTATTGAAAATGATTGCTTAATAATGCATGATCTCATTCAAGACATGGGCATAGAAATTGTTAGGCAAGAAGCACCATCAAAACTTGGTAAACGCAGCAGATTATGCTTTTATGAAGATGTTCTTAGAGTATTGAGGGAAGATTCGGGAAGCAGTAACATTGAAGGAATAATGTTGGACCCTCCTAAAGAAGAAAATGTAATATGGAGCGGCACTGCCTTTCAGAAGATGAATAATATTCGAATTCTCATTGTTCGAAATACACATTTTATACCAGAGCCTAGTTATTTGCCGAACAGTCTAAGGTTACTCGAATGGGATAGGTACCCATCAAAATCTCTCCCGTCAAATTTTCATCCTAAGGATATTGTTGACCTGAGCTTACCGTGCAGTCAACTCAACTTGAAGATGGAAAAATCGTTTCAGAAAATGTTGCATTTGACATACATGAATTTGTCAATGTGCCAATTCATAACCCATTTTCCTGATGCGTCTGGTGTTCCGAACTTGAAAGAACTTAAGCTTAACTACTGTAAAAATCTGATTGCGATTCATCCCTCAGTTGGATTTCTTAAAAAGCTCAAACATCTAAGCGCATGTCATTGCATGAATCTCAAAGATTTCTCACCAACAATGTGGTTGCCATCTCTACAATATCTCAACCTTGATTCCACAAGTATTGAGTTCTTCCCACAAACAGAGAAAACAATGCATGAGCCACTAGAAATCACCATGCAAAATGATCGAATTAAGGAGCTTCCAAGTTCCATTAGTAATCTAATGGGACTTAGAAAATTATACATACAATTCAAAGGGCTTGTTCCTGGAGGCTTACCAAATGATCTATTCATGTTGCCAGAGATGGTATATTTGTCTATTTTCGATTCTCCTAATGTTGGAGAATCATTTAAAAGATTCCTAATAGATAAACCAGGATGCTATTCTCCTTTGAGATTGTTGAATTGTAGTGCTTGTGGTTTAACCGATGAAGATCTTCACGCTATTCTATGTTGTTCTCCCAACTTGGAAGAGTTATATGTACCTTGGAATGAATTTGTGTGCCTCCCAACCATCATTAAGGAATCTTCTAAATTGAGGTATCTCTGTGTAACTAGGTGCAAGAAGCTTTCGGAAATACCAGAATTGCCATCAAGTATAAAAGTTTTAGAAGCAAAAGAATGCTCCATCTTGTCTTCAAAAGCATCTGGGTTATTATGGTCTCAGGCTTTAAAGGAAGCATACAGGCTACAAATCATAATGCCAAAAATAACAATGATTCCAATTTGGTTTGACCACTGTTATGAAGGGGGAGTTGTGTCATTTTGGGCTCGTCAAAAGTTTCCTGTTCTTGCTGTAGCGTTTATCTTGAAGGAGAAAGCATCCATGGGCTCTGCAAATTTGTACATTAATGGTTGCAACGCTCATCAGTTTATTAGTAATAACTATTATTGCCCTTACGTCAAAGGAGAGCATGTGTTGCTATTTGACCTACGCAGTTTGTTTAAGGATGATGAGGAGTGGAGAATCCTCGACACCTTTCTAATCTATGAATGGAACTATGTGGAGGTTAAATATGAATGTGACAATTTGCTTTTAAATGATGTGGTTGGAATGTCTAATGTAAGTCACTGTGGAGCTTATGTGTACAAGGGACAATCAAACATGGAGGATATTCAATTTCAGTGTCCTTATTCAACAATGTAA 3129 0.3768 MMANQDITITTDDYEPNNLVYDVFLSFRGEDTRYSFTGFLYDALLRKGVRVFMDDEELKGGDRIAQSLVNAIQQSRISIVVFSENYATSRWCLDELVEIVECMELKKRLLVWPIFYKVAPSDVRHQRKSYGEAMAAHEERFGNGSVKVQKWRSALSQVANLKGWSYQTGYEYEFIHEIVKRVTTKLQHEQSRIEELRSLLDIESQRTVCMLGIYGTGGIGKTALAKALYNTIIHKFECSIFLEGVRERSNSYMGLVNLQEAIISKLYDGEIIKLENIDDGIIKLKDTLKHKRVLLVLDDVDSEDQIKNLAGESNWFGSGSRIIITTRDKHVLNIGNVEKKFEIKRLHDHEALQFFCLKAFKMNHPLPEYKNVSNHVVHYAKGLPLALKVLGSHFANKSIRECECALKQFKRIQQRNIHDILKVSYDCLEDATKCVFLDIACFFKGASLQYVENVLEKCDIFPSYNIGRLVDKSLLAIENDCLIMHDLIQDMGIEIVRQEAPSKLGKRSRLCFYEDVLRVLREDSGSSNIEGIMLDPPKEENVIWSGTAFQKMNNIRILIVRNTHFIPEPSYLPNSLRLLEWDRYPSKSLPSNFHPKDIVDLSLPCSQLNLKMEKSFQKMLHLTYMNLSMCQFITHFPDASGVPNLKELKLNYCKNLIAIHPSVGFLKKLKHLSACHCMNLKDFSPTMWLPSLQYLNLDSTSIEFFPQTEKTMHEPLEITMQNDRIKELPSSISNLMGLRKLYIQFKGLVPGGLPNDLFMLPEMVYLSIFDSPNVGESFKRFLIDKPGCYSPLRLLNCSACGLTDEDLHAILCCSPNLEELYVPWNEFVCLPTIIKESSKLRYLCVTRCKKLSEIPELPSSIKVLEAKECSILSSKASGLLWSQALKEAYRLQIIMPKITMIPIWFDHCYEGGVVSFWARQKFPVLAVAFILKEKASMGSANLYINGCNAHQFISNNYYCPYVKGEHVLLFDLRSLFKDDEEWRILDTFLIYEWNYVEVKYECDNLLLNDVVGMSNVSHCGAYVYKGQSNMEDIQFQCPYSTM* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0625 1042 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Amo19g0625 1042 Gene3D Ribonuclease Inhibitor 538 716 IPR032675 -
Amo19g0625 1042 SUPERFAMILY L domain-like 484 871 - -
Amo19g0625 1042 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 21 935 - -
Amo19g0625 1042 Pfam TIR domain 21 196 IPR000157 GO:0007165
Amo19g0625 1042 Gene3D - 3 159 IPR035897 -
Amo19g0625 1042 Coils Coil 179 206 - -
Amo19g0625 1042 Pfam NB-ARC domain 192 428 IPR002182 GO:0043531
Amo19g0625 1042 Gene3D Ribonuclease Inhibitor 717 911 IPR032675 -
Amo19g0625 1042 PRINTS Disease resistance protein signature 380 394 - -
Amo19g0625 1042 PRINTS Disease resistance protein signature 210 225 - -
Amo19g0625 1042 PRINTS Disease resistance protein signature 287 301 - -
Amo19g0625 1042 PRINTS Disease resistance protein signature 640 656 - -
Amo19g0625 1042 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
Amo19g0625 1042 SMART till_3 20 161 IPR000157 GO:0007165
Amo19g0625 1042 Gene3D - 345 429 IPR042197 -
Amo19g0625 1042 CDD AAA 190 311 - -
Amo19g0625 1042 Gene3D - 170 340 IPR027417 -
Amo19g0625 1042 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 935 IPR044974 GO:0006952
Amo19g0625 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0625 Amo-Chr19 9732601 9741529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0625 21 768 WRKY Transcription Factor Family AT4G12020 30.334 2.31e-74 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0625 - - aip:107614956 1690.24