Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0616 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAAAAGGGAAGGTGGACAGAAGAAGAGGATGAACTATTAACAAAGTATATTCAAGTCAACGGTGAAGGTTCATGGAGGTCATTGCCCAAAAATGCAGGATTATTAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATTAATTATTTGAAAGCTGGGCTTAAGAGAGGCAACATTTCTGCTGAAGAAGAAGATCTCATTGTCAAGTTGCATACAACTTTTGGCAACAGGTGGTCTTTGATAGCGAGTCATTTGCCGGGAAGAACAGACAATGAAATCAAGAACTATTGGAACTCTCACTTGAGTAGGAAAATCTACAGTTTTCGGAGAGCAACTAACCTAGACACCACCCACATAGGGTCCACCGATACACCCAACAATGTTCCCGTTTATCCAAAGCCTAAACCTGGTAGAACAAGCCGTTGGGCCATGAAGAAGAACAAAACCTACATACACAACAATAAGGGTAACAATAATAATAATAATAATAATATTCATAACAACCAAAATAACCAAAAAGACGAAATTGCCCTTCGCCAGCTCAGCCCCCGAGAAAAAGAGGATGATGCTGTTCCAACTCCTTCGCTTGAGAGTGAGGGTTTTTGCAACACTGTTGAGGATCTCATGGTGTTGGATTTGGACCCTAACAACAATAATAATAATGGAGTGGAAAAAGAAGAAGAAGTAGAAGAAAAAGAAAAGGAAAAAGAAAAAGTTCAGTGCCCTACTACGTATGAGAAAGAAAAGAAGGACACGTTGTTAGGACCATATGATGAACAAGTTGAAGATCTTACTAATAATATTAATAATAATGGCGGTGGGGCGTTGAGTCTTGATGACATGTTGGACAATTTCATGTTGGAAGAAATTGTATGTGGGGTTCACAACTTAAATGAAGATATTGAAATCAATAATAATAATAATAATAATAATAATAATAATAATAGTGAAGAGTGGAATAATTTAGGGTTAGATGAATATTTGGATTGGGAGAGTGTTATGGAGTTCATGAATAATAATAATAATAATAGTGAGTCATCAGAGGGTTGTTATTTGGAGCAGAAAGAAAATTTGCTGACGTGGCTGTGGAAAGATGATGATGATTGGGAAAGTGACTGCATGAAGTTGGGGGAAAACATGGATAGTAGTGAGAAACAAAATGATGATGATGTTGTTGCTTGGTTTCTCTCTTGA 1227 0.3757 MGRAPCCEKVGLKKGRWTEEEDELLTKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYLKAGLKRGNISAEEEDLIVKLHTTFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFRRATNLDTTHIGSTDTPNNVPVYPKPKPGRTSRWAMKKNKTYIHNNKGNNNNNNNNIHNNQNNQKDEIALRQLSPREKEDDAVPTPSLESEGFCNTVEDLMVLDLDPNNNNNNGVEKEEEVEEKEKEKEKVQCPTTYEKEKKDTLLGPYDEQVEDLTNNINNNGGGALSLDDMLDNFMLEEIVCGVHNLNEDIEINNNNNNNNNNNNSEEWNNLGLDEYLDWESVMEFMNNNNNNSESSEGCYLEQKENLLTWLWKDDDDWESDCMKLGENMDSSEKQNDDDVVAWFLS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0616 408 Gene3D - 71 116 - -
Amo19g0616 408 MobiDBLite consensus disorder prediction 232 252 - -
Amo19g0616 408 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 338 - -
Amo19g0616 408 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo19g0616 408 CDD SANT 16 61 IPR001005 -
Amo19g0616 408 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo19g0616 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo19g0616 408 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo19g0616 408 MobiDBLite consensus disorder prediction 223 252 - -
Amo19g0616 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo19g0616 408 CDD SANT 71 112 IPR001005 -
Amo19g0616 408 SMART sant 13 63 IPR001005 -
Amo19g0616 408 SMART sant 66 114 IPR001005 -
Amo19g0616 408 Gene3D - 11 67 - -
Amo19g0616 408 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo19g0616 408 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo19g0616 408 PANTHER MYB TRANSCRIPTION FACTOR 2 338 - -
Amo19g0616 408 MobiDBLite consensus disorder prediction 128 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0616 Amo-Chr19 9598576 9605157 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0616 1 162 MYB Transcription Factor Family AT5G49330 66.860 6.67e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo19g0616 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0616 K09422 - gmx:100814275 338.191