Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0613 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAAAAGGGAAGGTGGACAGAAGAAGAGGATGAACTATTAACAAAGTATATTCAAGTCAACGGTGAAGGTTCATGGAGGTCATTGCCCAAAAATGCAGGATTATTAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATTAATTATTTGAAAGCTGGGCTTAAGAGAGGCAACATTTCTGCTGAAGAAGAAGATCTCATTGTCAAGTTGCATACAACTTTTGGCAACAGGTGGTCATTGATAGCGAGTCATTTGCCGGGAAGAACAGACAATGAAATCAAGAACTATTGGAACTCTCACTTGAGTAGGAAAATCTACAGTTTTCGGAGAGCAACTAGCCTAGACACCACCCACATAGGGTCCACCGATACACCCAACAATGTTCCCATTTATCCAAAGCCTAAACCCGGTAGAACAAGCCGTTGGGCCATGAAGAAGAACAAAACCTACATACACAACAATAAGGGTAACAATAATAATAATAATATTAATAACAACCAAAATAATGAAAAAGACGAAATTGCCCTTCGACAACTCAGCCCCGGAGAAAAAGAAGATGATGCGGTTCCAACTCCACCAACTCCTTCGCTTGAGAGTGAGGGTTTTTGCAACACTGTTGAGGATCTCATGGTGTTGGATTTGGACCCTAACAACAATAATAATAATGGGGTGGAAAAAGAAGAAGAAGAAGAAAAAGAAAAAGTTCAGTGCCCTACTACTACGTATGATGAGAAAGAAAACAAGGACACGTTGTTAGGACCATATGATGAACAAGTTGAAGATCTTACTAATAATATTAATAGTAATGGCGGTGGGGCGTTGAGTCTTGATGACATGTTGGACAATTTCATGTTGGAAGAAATTGTATGTGGGGTTCACAACTTAAATGAAGATATTGAAATCAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTGAAGAGTGGAATAATTTAGGGTTAGATGAATATTTGGATTGGGAGAGTGTTATGGAGTTCATGAATAATAATAATAATAATAGTGAGTCATCAGAGGGTTGTTATTTGGAGCAGAAAGAAAATTTGCTGACGTGGCTGTGGAAAGATGATGATGATGATTGGGAAAGTGAGTGCATGAAATTGGGGGAGAAGATGGATAGTAGTGAGAAACAAAATGATGATGATGTTGTTGCTTGGTTTCTCTCTTGA 1239 0.3745 MGRAPCCEKVGLKKGRWTEEEDELLTKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYLKAGLKRGNISAEEEDLIVKLHTTFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFRRATSLDTTHIGSTDTPNNVPIYPKPKPGRTSRWAMKKNKTYIHNNKGNNNNNNINNNQNNEKDEIALRQLSPGEKEDDAVPTPPTPSLESEGFCNTVEDLMVLDLDPNNNNNNGVEKEEEEEKEKVQCPTTTYDEKENKDTLLGPYDEQVEDLTNNINSNGGGALSLDDMLDNFMLEEIVCGVHNLNEDIEINNNNNNNNNNNNNNNNNSEEWNNLGLDEYLDWESVMEFMNNNNNNSESSEGCYLEQKENLLTWLWKDDDDDWESECMKLGEKMDSSEKQNDDDVVAWFLS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0613 412 Gene3D - 11 67 - -
Amo19g0613 412 CDD SANT 16 61 IPR001005 -
Amo19g0613 412 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo19g0613 412 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo19g0613 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo19g0613 412 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo19g0613 412 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 357 - -
Amo19g0613 412 MobiDBLite consensus disorder prediction 233 258 - -
Amo19g0613 412 MobiDBLite consensus disorder prediction 224 258 - -
Amo19g0613 412 MobiDBLite consensus disorder prediction 314 334 - -
Amo19g0613 412 Gene3D - 71 116 - -
Amo19g0613 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo19g0613 412 CDD SANT 71 112 IPR001005 -
Amo19g0613 412 SMART sant 13 63 IPR001005 -
Amo19g0613 412 SMART sant 66 114 IPR001005 -
Amo19g0613 412 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo19g0613 412 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo19g0613 412 PANTHER MYB TRANSCRIPTION FACTOR 2 357 - -
Amo19g0613 412 MobiDBLite consensus disorder prediction 128 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0613 Amo-Chr19 9458529 9465364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0613 1 162 MYB Transcription Factor Family AT5G49330 67.052 5.22e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo19g0613 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0613 K09422 - gmx:100814275 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0613 19 9458529 9465364 Amo09g0484 09 6179989 6184098 hybridization