Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0611 ATGGAGAAGAGAATTGTAACACAGTTACTGGTTAGCATGGATCAATCAAGTAGCTGTATGCAATCCGCTAATGATTCGGACAGTTCTAAAGTTCATTCTGGCCATGTTCTTGTAATTGGAGCAACAAATAGGCCTGATGCTCTTGACCCGGCCTTGAGAAGGCCTGGGCGGTTTGATCGTGAGATTGTTGTTGGCATTCCTGATGAATCTTCAAGAGAGCATATCCTTACGATGCTTACACGCAATCTTAAACTTGAGGGTTCATTGGATCTTAAACATATAGCAAGATCTACGCCAGGATACGTCAGTGCTGATTTGGTAGCTGTGGTTAAGGAGGCTGGTAATTTGGCAATAAAGAGAATCCTTTCTAGAAGGAAATGGGAACTATCTCAGGGTCTTACAAGGTGTCTTGGAGACTGGTGGAAGGAACCTTGGTCTCATGAAGATGTGGATAAGCTTTTTTGCACAATGTCTGATTTTCAGGAAGCAGTGAAAAAGGTGCAACCTTCATTAAGAAGAGAGGGCTTCTCATCCGTTCCCAATGTGAAATGGGAAGATGTTGGGGGCCTTGATTGTTTAAAGGAGGAGTTTGAATCCAGTATAATAAGGCCGATAAAATATCCCGAGGTTTATCAGACATTTGAGGTGGTAAATGAGACGGGAATTTTGCTTTTTGGGCCCCCTGGTTGCGGTAAAACTCTTATTGCCAAAGCTGTTGCCAACGAGGCAGGAGCTAATTTCATTCATATTAAGGGGCCTGAACTCTTAAATAAATTTGTTGGAGAAAGTGAGCGAGAAGTTCGACGAGTGTTTAGTCGTGCAAGGGCATGTTCACCCTGTATAGTATTTTTTGACGAGGTGGATGCTCTATCAACCAAACGTGATTCGGAAGGTGGATCGGTAGTCGAACGAGTAGTGAACCAGTTACTTATTGAGCTAAATGGTGGTGACCAGCGCCAAGGTGTTTTTGTTATTGGTGCTACAAATAGGCCCGATGTGATGGATGAGGCTCTCCTCCGTTCTGGTAGACTTGGTAAATTTCTTTACGTTCCTGTGCCGAACGCCGACCAGCGATTTTCAATATTGAAAGCTCTTGCAAGGAAGAAGCCTGCTGATTCTACTGTGGATTTGAGAGCCATAGCTGAAGCTTGTGAAAATTTTAGTGGCGCAGACCTTGCTGCATTGATGAATGAAGCAGCTAAAGCTGCTGTCAATGAGAAATTGACCTCAGTTGAAGCTACTAGTGATACTAATACATACATGCCAAGGCATTTTGAGATAGCACTTACTAAAGTCTCTCCCTCCGTGTCTCCCGCGGAAAGGCGAAGGTATGAGCGTTTGGCAGAGCGCTTTAAAGTATCATGA 1365 0.4388 MEKRIVTQLLVSMDQSSSCMQSANDSDSSKVHSGHVLVIGATNRPDALDPALRRPGRFDREIVVGIPDESSREHILTMLTRNLKLEGSLDLKHIARSTPGYVSADLVAVVKEAGNLAIKRILSRRKWELSQGLTRCLGDWWKEPWSHEDVDKLFCTMSDFQEAVKKVQPSLRREGFSSVPNVKWEDVGGLDCLKEEFESSIIRPIKYPEVYQTFEVVNETGILLFGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKFVGESEREVRRVFSRARACSPCIVFFDEVDALSTKRDSEGGSVVERVVNQLLIELNGGDQRQGVFVIGATNRPDVMDEALLRSGRLGKFLYVPVPNADQRFSILKALARKKPADSTVDLRAIAEACENFSGADLAALMNEAAKAAVNEKLTSVEATSDTNTYMPRHFEIALTKVSPSVSPAERRRYERLAERFKVS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0611 454 SMART AAA_5 218 354 IPR003593 -
Amo19g0611 454 CDD AAA 34 65 - -
Amo19g0611 454 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 1 450 - -
Amo19g0611 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 450 IPR027417 -
Amo19g0611 454 Pfam AAA+ lid domain 89 122 IPR041569 -
Amo19g0611 454 Pfam AAA+ lid domain 375 413 IPR041569 -
Amo19g0611 454 ProSitePatterns AAA-protein family signature. 36 54 IPR003960 GO:0005524|GO:0016887
Amo19g0611 454 Gene3D - 1 66 IPR027417 -
Amo19g0611 454 Gene3D - 353 430 - -
Amo19g0611 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 173 IPR027417 -
Amo19g0611 454 Gene3D - 67 174 - -
Amo19g0611 454 Pfam ATPase family associated with various cellular activities (AAA) 2 64 IPR003959 GO:0005524|GO:0016887
Amo19g0611 454 Pfam ATPase family associated with various cellular activities (AAA) 222 351 IPR003959 GO:0005524|GO:0016887
Amo19g0611 454 Gene3D - 179 445 IPR027417 -
Amo19g0611 454 CDD AAA 221 351 - -
Amo19g0611 454 ProSitePatterns AAA-protein family signature. 322 340 IPR003960 GO:0005524|GO:0016887
Amo19g0611 454 PANTHER AAA-FAMILY ATPASE 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0611 Amo-Chr19 9418653 9421304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0611 159 452 Calmodulin-binding Proteins AT3G56690 44.257 1.57e-73 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0611 K14571 - gmx:100809594 589.341