Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0606 GGGAAGTGGAAGAACATTCTCAAAGACCCTCAATTCGCACCATTTCTCACTTCACGTTCCAATATCGACCTCAAGGATAAATGGCGGAATTTGAGTGTTAGCAATGGCACTCAAGGGTCCAAGGAAAAATCTAGGGTTCCTAGAATCAAGGCTGCGGCCCCTATTGCTGCTACCCCAGTTGCTGCTGCTGCTGCTAGTAATGCCATTGTTGTTGCCGGGGAAGATGCTACTATTGTCACCACTATGATTCATCAACCTGATCCTTCTGTTGCTGTGGGTGATTCTTCTCAAAATGACGAAGATGCCAAGAATCGTCCGAGGTACAATGCAATGGTTTTAGAAGCGCTATCAACTTTGAAAGATGCTAATGGATCTGACCTGAATGCGATTGTTAACTTCATTGAGGTACAAAACTGTTACAAGATTAAAAAGGACTATTCACCTGTGCCAAAATCACCAGTTGCTGTGAAAAAGAATGTGTGGCCACAACGGCAACAACCACCACCACCCCCCGAGTTTGTGGCATCTAATGAGACAATAAAGGAAGCTGCTGAAACTGCAGCCTACAGAATTGCCGAGGCTGAAAGCAAGTCATATTTAGCCGCTGAAGCAGTCAAGGAGGCAGAACGAATTGCACGCTTAGCTGAAGATGCTGAGGCGATGTTACAGCTAGTACAACAGATTTATGATGCTTGTTCGCGCGGTGAAGCTGTCATCTTGGCATCTTAA 729 0.4554 GKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGTQGSKEKSRVPRIKAAAPIAATPVAAAAASNAIVVAGEDATIVTTMIHQPDPSVAVGDSSQNDEDAKNRPRYNAMVLEALSTLKDANGSDLNAIVNFIEVQNCYKIKKDYSPVPKSPVAVKKNVWPQRQQPPPPPEFVASNETIKEAAETAAYRIAEAESKSYLAAEAVKEAERIARLAEDAEAMLQLVQQIYDACSRGEAVILAS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0606 242 PANTHER SINGLE MYB HISTONE 4 136 241 IPR044597 GO:0003691
Amo19g0606 242 SUPERFAMILY "Winged helix" DNA-binding domain 103 139 IPR036390 -
Amo19g0606 242 CDD SANT_TRF 1 31 - -
Amo19g0606 242 Gene3D - 100 162 IPR036388 -
Amo19g0606 242 Pfam linker histone H1 and H5 family 106 138 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo19g0606 242 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 135 - -
Amo19g0606 242 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 136 241 - -
Amo19g0606 242 Coils Coil 201 221 - -
Amo19g0606 242 Gene3D - 1 57 - -
Amo19g0606 242 PANTHER SINGLE MYB HISTONE 4 1 135 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0606 Amo-Chr19 9357516 9359356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0606 1 240 Single Myb Histone (SMH) Gene Family AT1G17520 37.993 7.64e-48 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0606 K09422 - gmx:778177 254.218