Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0604 ATGGATCATTACAAGGTTCTAGGGTTGCACAGAACCGCATCAAAGGAAGAGATCAAAGCAGCGTTCAAGAAATTGGCGTTTCAATTCCATCCAGACAAGCACTCCCATTCGCCCAAGGTCGTCAGGGACAACGCCACGCTTCGATTCAAGCAGGTTTCTGAGGCTTATGAGGTCCTCATGGACGATCGCAAGCGCGCCGATTACAATTTCCGCTCCCGCTCCACCGCTGCCGGTGGTAGCAGCAGTTACTATTCGCAGTATTCTTACGGATATGGTCGTGGGAGTAGTAGTTACCAACAAAGGTCCAGGCATCAATATGGTGGTGGTGGTGGCGGCGGAGGCGGCATTGCTTCGAAGTTTGAGCTTGCTATTCGAATTTTGACGGCGAGATCTTCTCTCCTCAATCTCGGCTTTGCAGCAGCTATATTGGGTGGAATAGTTATCATCGATAAAAGTGGAGAATCTTTGTGGGAAAGGCAAAATTCAGGGAAATCATTTGAAGAAGCCATGAAGTCTATTGATAAGGCCAAAGCATACAGAGAAGATAGCGCGAAGGAACGTACGTGA 567 0.485 MDHYKVLGLHRTASKEEIKAAFKKLAFQFHPDKHSHSPKVVRDNATLRFKQVSEAYEVLMDDRKRADYNFRSRSTAAGGSSSYYSQYSYGYGRGSSSYQQRSRHQYGGGGGGGGGIASKFELAIRILTARSSLLNLGFAAAILGGIVIIDKSGESLWERQNSGKSFEEAMKSIDKAKAYREDSAKERT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0604 188 SUPERFAMILY Chaperone J-domain 1 75 IPR036869 -
Amo19g0604 188 CDD DnaJ 2 61 IPR001623 -
Amo19g0604 188 Gene3D DnaJ domain 1 119 IPR036869 -
Amo19g0604 188 PANTHER CO-CHAPERONE PROTEIN DJLA 1 171 - -
Amo19g0604 188 PANTHER CHAPERONE PROTEIN DNAJ 72 1 171 - -
Amo19g0604 188 PRINTS DnaJ domain signature 4 22 IPR001623 -
Amo19g0604 188 PRINTS DnaJ domain signature 22 37 IPR001623 -
Amo19g0604 188 PRINTS DnaJ domain signature 44 64 IPR001623 -
Amo19g0604 188 PRINTS DnaJ domain signature 64 83 IPR001623 -
Amo19g0604 188 Pfam DnaJ domain 2 69 IPR001623 -
Amo19g0604 188 SMART dnaj_3 1 64 IPR001623 -
Amo19g0604 188 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Amo19g0604 188 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0604 Amo-Chr19 9347754 9350951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0604 3 69 C2H2 Transcription Factor Family AT1G74250 40.299 4.04e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0604 - - gmx:100782769 251.136