Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0593 ATGGAGATCCGCGAAGCAAAGTTTCTCTGCAGCTACGGCGGCGAGATCAAGCCCCGCGGCCGCAACAACAAGCTCGCCTACATCGATGGAACCAATAAGCTTCTTTATGTTGACCGCAGAATTGACTTCACAGCCATGGTTTCCAAAATCTCCAGCCTTTTTGACGGCGCCTCCAACCGCGACAACTTCTTCAAATACCAAGTCCCCGGCAGCGATGACCTCAATGCTCTCGTCTCCGTCACCAACGACAGAGACCTTCATAACATGATGCTCGAGTTCGATCAACTCTACCGCGATTCCCCTAGATTCGCCCGCATGAGACTCTTCCTCTTCCCAAACCCTAACAAACCTCTCGATTCGGTTAAGCCAAACTCTAATAGGCTATCTTCGAATCTTTGGAAGTATGATGTGTTTATCAGCTTTAGAGGGAAGGACATTCGTACGGGATTCAGTTCCCATCTTGTCGAAGCTCTGAATCAAAACCAAATAAAAACCTTCATTGATGATGAGCTTCACAAAGGGGATTGCATCTTGGATTCTCTTACAAGAGCTATTGAAAATTCGTCTATATCTGTTATCATCTTGTCAGAGAATTTTGTTACCTCAAGTTGGTGCCTTCACGAGTTATTGAAAATAATGGAGTGCGGAAGGAAAGTTATACCTGTGTTTTATGGTGTGGATCCATCAGATGTGCGAAAGCAGCTAGTAAGTTTCAATGAAAAATTCAAGTCTCACTTGCAGAGTGACATTAACAATCTTCTGAAATGGATGGAAGCTCTCGCCAAAATAGCGGATTTAGATGGCTGGGACTCCGGCTCTTGTAGGGACGACTTTGAACTTGTTGAAAAGATTGTCAAAGATATTTTGCGAGAGCTGAATAATCATTGCCTGCATAAGGATGTCAAGAGTTTAGTTGGTGTTGATAAAAATCATGAAAAGTTAGAAATGTTATTAAGTTCAGTTCCTGATGAACAAACGGGAATAATTGGGATTTGTGGGATGGGAGGATTGGGCAAAACAACTTTAGCAAGACTTTTATATCAGGAACTTTCTCATCAGTATGAAGGTTCCTGCTTCCTAGGAAATGTTCGGGAAAGATCAGAAAAGTATGGGCGGGGACTAGATGAGTTGCGAAATCAACTTTACTTGGAGTTGTTACAAGGAAAAGATTGCGAAAATACCATGGCAAATACAACTTCAAAGTGCAGGCTCAGCAGACAAAGAAATTTCATAGTTCTTGATGATGTGAGTAGCTCAAAACAATTAGAATACCTAGCTGGGGACCTTCAGTGCTATGGTGCAGGAAGTAGAATCATTGTGATAACAAGGGACAAGAGTGTGCTGAAAAAAGGAGTTGAAAAATTTCATCAGATGGAGGTGTTAGATTTTCAAGATTCCCTTATATTGTTTAGCTTGAATGCGTTCAATCAAGACTATCCAAAAAGGGGATACCAAGAGCTATCATGGAAAGCAGTTACCTACTGCAAAGGTGTCCCATTAGCTTTAAAAGTATTGGGTTCTTTTCTTTGTTCCAAGAGTGAAACTGAATGGGATAATGTTCTGCAAAAACTCGAGAAGAATCCTAATGCAGCAATTCAAAATGTGTTAAGATTGAGTTGTAATGGATCAGATTATCAGGGGAATCATATTGTTCTAGACATTGCATCAGTTTTTAAGGGGGAGCAAAAGGAACAACTAGTTAATGTATTTGATAGTTGCAGTTTCTATACAGCTAGAGGCATGAGTTCCCTTCTTGATGAGGCTCTAATAGCTATGTTCGATCATTTTGGGTTATCTCATGTCTTGTACAAGAAATGGGGTAGAGAATCCTTTGTCAGAGAACTATCAAGAATTGTCAAAGTCATAGCCATTTGTGGGATGTTGGTGATGCTTGTGATGTTTTGGAAAATAATAAGGAGAGTGTTCAATTGA 1932 0.4079 MEIREAKFLCSYGGEIKPRGRNNKLAYIDGTNKLLYVDRRIDFTAMVSKISSLFDGASNRDNFFKYQVPGSDDLNALVSVTNDRDLHNMMLEFDQLYRDSPRFARMRLFLFPNPNKPLDSVKPNSNRLSSNLWKYDVFISFRGKDIRTGFSSHLVEALNQNQIKTFIDDELHKGDCILDSLTRAIENSSISVIILSENFVTSSWCLHELLKIMECGRKVIPVFYGVDPSDVRKQLVSFNEKFKSHLQSDINNLLKWMEALAKIADLDGWDSGSCRDDFELVEKIVKDILRELNNHCLHKDVKSLVGVDKNHEKLEMLLSSVPDEQTGIIGICGMGGLGKTTLARLLYQELSHQYEGSCFLGNVRERSEKYGRGLDELRNQLYLELLQGKDCENTMANTTSKCRLSRQRNFIVLDDVSSSKQLEYLAGDLQCYGAGSRIIVITRDKSVLKKGVEKFHQMEVLDFQDSLILFSLNAFNQDYPKRGYQELSWKAVTYCKGVPLALKVLGSFLCSKSETEWDNVLQKLEKNPNAAIQNVLRLSCNGSDYQGNHIVLDIASVFKGEQKEQLVNVFDSCSFYTARGMSSLLDEALIAMFDHFGLSHVLYKKWGRESFVRELSRIVKVIAICGMLVMLVMFWKIIRRVFN* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0593 643 Gene3D - 461 543 IPR042197 -
Amo19g0593 643 Pfam NB-ARC domain 310 530 IPR002182 GO:0043531
Amo19g0593 643 Gene3D - 131 288 IPR035897 -
Amo19g0593 643 Pfam PB1 domain 23 112 IPR000270 GO:0005515
Amo19g0593 643 SUPERFAMILY CAD & PB1 domains 23 120 - -
Amo19g0593 643 Gene3D - 289 459 IPR027417 -
Amo19g0593 643 SMART till_3 134 266 IPR000157 GO:0007165
Amo19g0593 643 PRINTS Disease resistance protein signature 328 343 - -
Amo19g0593 643 PRINTS Disease resistance protein signature 403 417 - -
Amo19g0593 643 PRINTS Disease resistance protein signature 495 509 - -
Amo19g0593 643 ProSiteProfiles TIR domain profile. 133 292 IPR000157 GO:0007165
Amo19g0593 643 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 127 597 - -
Amo19g0593 643 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 127 597 IPR044974 GO:0006952
Amo19g0593 643 Pfam TIR domain 134 305 IPR000157 GO:0007165
Amo19g0593 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 546 IPR027417 -
Amo19g0593 643 CDD PB1_UP2 9 111 - -
Amo19g0593 643 SUPERFAMILY Toll/Interleukin receptor TIR domain 126 269 IPR035897 -
Amo19g0593 643 SMART PB1_new 20 111 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0593 Amo-Chr19 9204566 9210958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0593 121 595 WRKY Transcription Factor Family AT4G12020 27.273 3.56e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0593 - - adu:107464449 1283.09