Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0565 ATGAGCTCCTCAAACTCCACCATTACAACACGCACTGGCAACAGCACCACCCAGGCCTGTGCTGCCTGCAAATACCAACGCCGCAAATGCGCTCCCGATTGCATTCTCGCCCCCTATTTCCCCCATGACCGCCAACGCCAGTTCCTCAACGCTCACAAGCTTTTCGGCGTAAGCAACATCACCAAGATCATCAAGGTCCTTAATCCTCACGAAAAGGACGAAGCTATGAAAACCATCATCTTTCAATCCGATATGCGAGCCAAGGACCCCGTTGGCGGTTGCTATCGCATGGTACAAGATCTTCAGGCTCAGATCGAGTTTCACCTGGCCGAGTTGGAGCTCGTCCTTCAACAATTGGCTATACTTAGAGCCCAGGCCCAACATCAACAGGCCCAACATCTTTATAACCAAACCGCCACCAGTAATATTAATGTCAGCGTCAACGGAGATGACAGTATCAATTCAGATCCGTTGACGCTGTACAGTTCTGGTGGCGGTGGCGGCCTTGTTGTTGGTGGTAATGGGGTTAACCATTACCATTACCTTCAACAAATGCCGCATCACGAGCAGTGTATGATGGTGCAAGAGGTGAATGATAGCAGTAGCAACAACGGTACCCCTTTGCAAGAACATGCTAACATGTGGTCCATGCAAAATTCGCTATCGTCGTTGTCGTTGCAGGGGCAGAATAGTAACTGTAGTGTTGGTGATGAGTATGATCATAAGCCAATGCTTGATATGCCTTCCGATGACAGAAATGAACTTGGATTTGAGCCTCAAGATTTAGTTCAGCGCAGTGATGAAGCAGTTTTGTTTAAGATAGATGATGCTGTAATAAAAGCAGAAACTGATTGCTTCCAACAAGTTCAAGACCATGATCTGAAAGGTGCAGCAACTTTGTTTACACTCACAAATTGTACTAGCTGA 927 0.4714 MSSSNSTITTRTGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKVLNPHEKDEAMKTIIFQSDMRAKDPVGGCYRMVQDLQAQIEFHLAELELVLQQLAILRAQAQHQQAQHLYNQTATSNINVSVNGDDSINSDPLTLYSSGGGGGLVVGGNGVNHYHYLQQMPHHEQCMMVQEVNDSSSNNGTPLQEHANMWSMQNSLSSLSLQGQNSNCSVGDEYDHKPMLDMPSDDRNELGFEPQDLVQRSDEAVLFKIDDAVIKAETDCFQQVQDHDLKGAATLFTLTNCTS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0565 308 Coils Coil 98 132 - -
Amo19g0565 308 Pfam Lateral organ boundaries (LOB) domain 19 114 IPR004883 -
Amo19g0565 308 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Amo19g0565 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 13 242 - -
Amo19g0565 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0565 Amo-Chr19 8657564 8659921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0565 18 261 AS2 family AT3G13850 48.387 4.07e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo19g0565 LOB 3.4e-35 No_clan