Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0562 ATGTCTAATTTGACTTCAGCTTCAAACGAAGGTAATAACAGTGTTTCCTCAGACCCAGATGCTGAGGTAATAGCTTTATCTCCAAAATCTCTCTTAGCAACAAACAGATTCATGTGTGAGATCTGCAACAAAGGGTTCCAGAGAGACCAAAACCTACAACTCCACAGAAGAGGCCACAACCTACCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGATAAGGAAGAAAGTGTACGTGTGTCCTGAACCCAGTTGCGTCCACCACGACCCGTCACGGGCCCTGGGGGACTTGACTGGGATCAAGAAACACTTCTGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCAAAGAAGTATGCAGTTCAATCTGATTGGAAAGCGCATTCCAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCACTTGCACAAGAGACAGCAAGAACCACCACCACCACTTCAACAACAACAATACCCCAACTTCATCATCAATTCAATAATCCCCAAATTTTCCCATTGAAGAAAGAGCCATTACAGTTACACCACCAAAGTTTCAACCTTGTTAGGACAGAACTACCCCCATGGCTTGGAAGTAGCAGTAGTAGTAGTAATACTCCAACCCCATCACAAAATAATCATCAAGGTCAAGACTTTTTGAATCTCCATGAAAATAATGAGAACCCAAATCCAAATCCAAACCCTAACCCTAGGCTTGTAGGTGTTGGTGGTCCCACAATTGAAGGGTACCCTTCAGCTCACATGTCAGCAACAGCTTTGCTGCAAAAAGCAGCTCAGATGGGTGCAACCATGAGCAGCAGCATTGGGCCCCACCATCAAAGTCACGTGTCTGTTAATCCTTCTGCCACTCTTAATCACTTTCCTTTGAATTTGTCCTCACGTGATCACCACCACCATAACCATAACCATATCACCACAACCACCACCACCACTACCACCACAACTGCTGCTCCTTCTTCTTCTTCTTCTCTTCTTCATGATGTCATGATGATGAACTCTTTCTCTTCTGGATTTGAAGCGGCACAGTTTGATGATCCCTTTGGTGGAATTCTTGTTAGTAATAATAATATCACAAAGAAAGATGGTGATGATAATGGTAACGGTAATGGTAATGATGGCAATAATAATAATAACTTCTTGTTGCATGATACTCTTCCAAAGGCAACAACCACCACCGCCAATGACCGTGGTGGTGGCCGTGGCGGCGGTGCAAAAGAAGAGTTGACGAGGGATTTCTTGGGTCTAAGGCCACTTTCCCATAGTGACATTCTCAACATTGCTGCTATGGGAAACTGGAAGGACGTTCTACAATCTTAG 1401 0.4454 MSNLTSASNEGNNSVSSDPDAEVIALSPKSLLATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARTTTTTSTTTIPQLHHQFNNPQIFPLKKEPLQLHHQSFNLVRTELPPWLGSSSSSSNTPTPSQNNHQGQDFLNLHENNENPNPNPNPNPRLVGVGGPTIEGYPSAHMSATALLQKAAQMGATMSSSIGPHHQSHVSVNPSATLNHFPLNLSSRDHHHHNHNHITTTTTTTTTTTAAPSSSSSLLHDVMMMNSFSSGFEAAQFDDPFGGILVSNNNITKKDGDDNGNGNGNDGNNNNNFLLHDTLPKATTTTANDRGGGRGGGAKEELTRDFLGLRPLSHSDILNIAAMGNWKDVLQS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0562 466 MobiDBLite consensus disorder prediction 1 20 - -
Amo19g0562 466 Gene3D Classic Zinc Finger 13 83 - -
Amo19g0562 466 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 458 - -
Amo19g0562 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 59 IPR013087 -
Amo19g0562 466 MobiDBLite consensus disorder prediction 386 410 - -
Amo19g0562 466 MobiDBLite consensus disorder prediction 218 268 - -
Amo19g0562 466 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 16 458 - -
Amo19g0562 466 Gene3D Classic Zinc Finger 91 171 - -
Amo19g0562 466 SUPERFAMILY beta-beta-alpha zinc fingers 36 133 IPR036236 -
Amo19g0562 466 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Amo19g0562 466 MobiDBLite consensus disorder prediction 218 250 - -
Amo19g0562 466 SMART c2h2final6 113 133 IPR013087 -
Amo19g0562 466 SMART c2h2final6 78 108 IPR013087 -
Amo19g0562 466 SMART c2h2final6 37 59 IPR013087 -
Amo19g0562 466 Pfam Zinc-finger double-stranded RNA-binding 37 59 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0562 Amo-Chr19 8635033 8638085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0562 18 455 IDZ Gene Family AT1G55110 44.492 1.07e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo19g0562 zf-C2H2_jaz 5.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0562 K25870 - gmx:100808344 454.521