Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0555 ATGGGTAATCAGAAGCAAAAGTGGACGCAAGACGAAGAAGATGCACTCATCGCTGGCGTGGAAAAACACGGTCCAGGGAAGTGGAAGAACATTCTCAAAGACCCTCAATTTGCACCATTTCTCACTTCACGTTCCAATATCGACCTCAAGGATAAATGGCGGAATTTGAGTGTTAGCAATGGCACTCAAGGGTCCAAGGAAAAATCTAGGGTTCCTAGAATCAAGGCTGCGGCCCCTATTGCTGCTACCCCAGTTGCTGCTGCTGCTGCTAGTAATGCCATTGTTGTTGCCGGGGAAGATGCTACTATTGTCACCACTATGATTCATCAACCTGATCCTTCTGTTGCTGTGGGTGATTCTTCTCAAAATGACGAAGATGCCAAGAATCGTCCGAGGTACAATGCAATGGTTTTAGAAGCGCTATCAACTTTGAAAGATGCTAATGGATCTGACCTGAATGCGATTGTTAACTTCATTGAGCAAAAACACAAGGTTCCTCAGAATTTCAGAAGGGCATTGAGTACCAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAACTGTTACAAGATTAAAAAGGACTATTCACCTGTGCCAAAATCACCAGTTGCTGTGAAAAAGAATGTGTGGCCACAACGGCAACAACCACCACCACCCCCCGAGTTTGTGGCATCTAATGAGACAATAAAGGAAGCTGCTGAAACTGCAGCCTACAGAATTGCCGAGGCTGAAAGCAAGTCATATTTAGCCGCTGAAGCAGTCAAGGAGGCAGAACGAATTGCACGCTTAGCTGAAGATGCTGAGGCGATGTTACAGCTAGTACAACAGATTTATGATGCTTGTACTTCAACTCAATTATCCTACCTACCAAATAGTGAATTCTCTAAGTTGATTTGGTTATCACTGCTTTTGGGTTCATAA 933 0.4427 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGTQGSKEKSRVPRIKAAAPIAATPVAAAAASNAIVVAGEDATIVTTMIHQPDPSVAVGDSSQNDEDAKNRPRYNAMVLEALSTLKDANGSDLNAIVNFIEQKHKVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDYSPVPKSPVAVKKNVWPQRQQPPPPPEFVASNETIKEAAETAAYRIAEAESKSYLAAEAVKEAERIARLAEDAEAMLQLVQQIYDACTSTQLSYLPNSEFSKLIWLSLLLGS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0555 310 Coils Coil 254 274 - -
Amo19g0555 310 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Amo19g0555 310 Pfam linker histone H1 and H5 family 131 190 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo19g0555 310 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Amo19g0555 310 SUPERFAMILY "Winged helix" DNA-binding domain 128 206 IPR036390 -
Amo19g0555 310 Gene3D - 8 82 - -
Amo19g0555 310 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Amo19g0555 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Amo19g0555 310 SMART h15plus2 127 192 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo19g0555 310 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 129 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo19g0555 310 SMART sant 4 59 IPR001005 -
Amo19g0555 310 CDD H15 130 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo19g0555 310 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 288 - -
Amo19g0555 310 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Amo19g0555 310 CDD SANT_TRF 6 56 - -
Amo19g0555 310 Gene3D - 125 207 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0555 Amo-Chr19 8374581 8377670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0555 1 293 Single Myb Histone (SMH) Gene Family AT1G17520 47.368 3.31e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo19g0555 Linker_histone 8.6e-13 CL0123