Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0548 ATGGAGAATTACGACGTGAAGTTTCTCTGCAGCTATGGCGATGAGATCCACCACCACCCCAACGACAAGAAGATCTCCTACGTCGGCGGCCTCAACAAGCTCCTCTACGTTAACCGTGGAATCGACTTCACCGCCATGCTCGCCGAACTCTCCGCCCTCTTTGACGCCACCGGTGACATCCACTTCAAGTATCAGCTCCCCGGCGATGACTTCGACTCTCTAATATCCGTCACCAGCGACAGCGGCCTAAACAGCCTGATGCTTGAGTATGATAACCTCTACAGAGATTCCCCTAAAACCGCTCGGATGAGATTATTCATCTTCTATGGTAAGGGTCCTGATTCCGCGTCCACCCAACCCTTCCCAGTCAAACTGAAATCCAAAGTCAACGGCGATGCTGTTGTTCCTCCGCAAATTACGCCGGTGAAGTTCCAAGATCTGCCACCGGTTAACAATTTTAATACCTCAGACCGAGCGTTGGATTCGGATCCAAAAGTGAATCAACCGGTCGAAGATTCCGGTTCTTCCCGTTTGAATAGTCCGTTACCTGCTTTACAGTATGATGTTTTCATCAGCTTCAGAGGTGAGGATACACGCGCAAGCTTCACTTCCCATCTTTCCAAAGCCCTGTCCCGAAAGCAGATAGTTACATACACTGATGACTTGCTTCACGAAGGAGATTCGATCACGTCCATCCTCCTCAGAGCAATTGAAGAATCTTGCCTTTTGCTTGTTGTATTCTCAGAGAACTACGCATCCTCAAAGTGGTGCTTGCAAGAACTGGTTAAAATAATGGAGTGCAAGAAAGAATTTGGACGGCTTGTTATACCTGTCTTCTACAACGTTGATCCATCACATGTAAGGTATCAGCTAGGAAGTTACAGTGAAGCGTTTAAAAAACACTTGCAGAATAACAAGAAGGCGGAGGTTCAGAAGTGGAGGGAAGCTCTCACTGCAGCAGCAAATTTAGAAGGCTTGGACTCCCGTTCTTATGGGGACGAAATTGAATTCATTCAGAATATTGTCAAAGATGTTTTGCAGAAGCTGATTGACCATAACCCACCCAATGATAGTAAAAATCTTGTTGGCATTAGTGAAAATCTTGAAAATGTAAAATCACTATTAAGTGAATCTGTTGAAGTCAGAATGATTGGAATTTGTGGCATAGGGGGTATAGGAAAAACAACTCTAGCAAGAATTATATTTGAGAAATATTCTTATAAGTTTGAAGGCTCCTGCTTCTTAGAAAATGTACGGGAAAGATCAGGAAAGTATGGAAAATCCACTTTTGTTAAGCACAGGTTAAGCAAACAAAGAAATTTCATAGTTCTTGATGATGTGAGTAGTTTAAAGCAATTAAATTACCTGGTTGGGGAGCTTCAATGCTGTGGCGCAGGTAGTAAGATCATTATCACAGCTAGAGACAAAAATGTGCTGGTTCCAACGGTTGAAACAATATATGAGATGAAGATATTAGATTCTCATGAATCATTTAAACTGTTTAGTTTGAATGCATTCAATGAAGACTATCCACAAATTGGATACGAGGAGCTATCATGGAAAGCGGTTGGCTGTTGCAAAGGCATCCCACTAGCCTTAATAGTATTGGGTTCTTTTCTTCATTCAAAGAGTAAAACTGAATGGCATAGTGCATTGCAAAAGCTTGAGAAGACACCAGATCCAGAAATTCAGAATATTTTAAGATTGAGTTATGATGGATTAGATGATGAGGCAAAACAAATTTTTCTAGACATCGCATGTTTTTTTAAGGGAGAGCTTGTAGAATACGTAGTTAATCTGTTAGGCAGTTGTGGCTTCTATGCAGCTATTGGCATGAGATCCCTTCTTGATAGAGCTTTAATAGCTATATCTCATAATTGTGTGCAGATGCATGACTTGATCCAAGAATTAGGTTGGGATATCGTTTGTCAACAATCTAGTGGAAATCCTGAAAATCGTAGCCACTTGTGGGATTCTAATGATATTTGGGATGTTTTGGGAAACAACAAAGGAACTGATTCTATTGAAAGCATAGTGTTGGATATGTCTCAAATAGAAGATCTACAGTTGAATGCTGATACATTCAAAAAGATGCCTAAGTTAAGATTTCTCAAATTATATATCCCATCGGAAAATGATGGCAGATTGAATAAATTGCATCTTCCCGTAGGACTAAAGCCATTTCCTTCTAAATTAAGATACTTGGAGTGGGATGCCTACCCTTTGCCATCTCTGCCATCGAATTTTTGTCCTGAGAAGCTTGTTACTCTTCGCATCCGGAACAGTAAACTTAAAAGACTTTGGGATGGGGTTCAGAATCTTGTTAATTTAGAGGAAGTAGATCTAACAGATTCCCGAAAGTTGGTGGAGCTTCCAGATTTCTCCAAGGCAGATAATCTCAAAAGTGTACATCTGTCTGGCTGTCGAAGTTTGCGTCATGTCCATCCATCTCTTTTATCACTTGGAAAACTTGAACTTTTAGATCTTTTGAACTGTGCAAAACTTGAGATGCTTGAAACTAAGATGCATTCAAAATCTCTTAATCACCTCTATATCAAGAGCCGCACAAGTTTAATCCCACCCTATGTCAGTCACTTATCATCTTTACGGAAATTACTTCTAGATGGAAGCCCTGTGGAGACATTGCCGGTGAGCATCAAACACCTTACGGAGCTGAAAACACTGTCACTAAAAGGGTGTAAGATGCTTCAACATTTGCCAGAGCTTCCATCATCCATTCGTCATTTGACTGCTCTGGACTGCATAATGCTGCAAACTGTGACATTCAGTTCAAATATTCCTAGACTACAAGAAGAAAAACGCATAAACATCTCGTTCCATAATTGCATGAAGTTGGATGTGGCGAATTGTATTTATTGGTACCTTAAAGATATAAGGAAACTTGCTTACGTGTGTGAATCCAGAAGAGGAGGAAAAGGAGTAGTTCGGAGAAGTGATTTCTTCAAGATTTGTTACCCCGACTACAGAGTACCAGAGTGGTTCATGCATCGGACAAAGGGTACTTCCATAACTTTTGAAGTTTCTTCACCTTCCAGTTATGGTTTTAGTTCCCTTCTCTGCGTTGTTCTCCCTAAGTATAGTTTGGATTATGAACTTGATATTAAATGCCGTTGCTACTTGGAAGATGGTAGTAACATGCACAAATATTCATTTGGCGTATTATTTCTAAATCACATTCCGGCAAAAGGGTGTTCTGATCATGTTTATATGGCATATAATTATGGAGGCATCTTTGATGTAATCAAGCTGGACAGATTGAATAATAAGATTGCGTCTTCCGGGCAAAACCCAAAAGTCACATTTGAATTCTTTGTCAGCAGTGGCGATACTGGAAGTAAACAAGATGATAACTTGTTGATCAAAGAGTGTGGTGTCTATCCACTAAATGACTCCAATTTTAGAACTGAATAG 3432 0.405 MENYDVKFLCSYGDEIHHHPNDKKISYVGGLNKLLYVNRGIDFTAMLAELSALFDATGDIHFKYQLPGDDFDSLISVTSDSGLNSLMLEYDNLYRDSPKTARMRLFIFYGKGPDSASTQPFPVKLKSKVNGDAVVPPQITPVKFQDLPPVNNFNTSDRALDSDPKVNQPVEDSGSSRLNSPLPALQYDVFISFRGEDTRASFTSHLSKALSRKQIVTYTDDLLHEGDSITSILLRAIEESCLLLVVFSENYASSKWCLQELVKIMECKKEFGRLVIPVFYNVDPSHVRYQLGSYSEAFKKHLQNNKKAEVQKWREALTAAANLEGLDSRSYGDEIEFIQNIVKDVLQKLIDHNPPNDSKNLVGISENLENVKSLLSESVEVRMIGICGIGGIGKTTLARIIFEKYSYKFEGSCFLENVRERSGKYGKSTFVKHRLSKQRNFIVLDDVSSLKQLNYLVGELQCCGAGSKIIITARDKNVLVPTVETIYEMKILDSHESFKLFSLNAFNEDYPQIGYEELSWKAVGCCKGIPLALIVLGSFLHSKSKTEWHSALQKLEKTPDPEIQNILRLSYDGLDDEAKQIFLDIACFFKGELVEYVVNLLGSCGFYAAIGMRSLLDRALIAISHNCVQMHDLIQELGWDIVCQQSSGNPENRSHLWDSNDIWDVLGNNKGTDSIESIVLDMSQIEDLQLNADTFKKMPKLRFLKLYIPSENDGRLNKLHLPVGLKPFPSKLRYLEWDAYPLPSLPSNFCPEKLVTLRIRNSKLKRLWDGVQNLVNLEEVDLTDSRKLVELPDFSKADNLKSVHLSGCRSLRHVHPSLLSLGKLELLDLLNCAKLEMLETKMHSKSLNHLYIKSRTSLIPPYVSHLSSLRKLLLDGSPVETLPVSIKHLTELKTLSLKGCKMLQHLPELPSSIRHLTALDCIMLQTVTFSSNIPRLQEEKRINISFHNCMKLDVANCIYWYLKDIRKLAYVCESRRGGKGVVRRSDFFKICYPDYRVPEWFMHRTKGTSITFEVSSPSSYGFSSLLCVVLPKYSLDYELDIKCRCYLEDGSNMHKYSFGVLFLNHIPAKGCSDHVYMAYNYGGIFDVIKLDRLNNKIASSGQNPKVTFEFFVSSGDTGSKQDDNLLIKECGVYPLNDSNFRTE* 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0548 1143 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 180 905 - -
Amo19g0548 1143 CDD PB1_UP2 9 108 - -
Amo19g0548 1143 SMART till_3 186 323 IPR000157 GO:0007165
Amo19g0548 1143 SUPERFAMILY L domain-like 629 964 - -
Amo19g0548 1143 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 180 905 IPR044974 GO:0006952
Amo19g0548 1143 Pfam PB1 domain 21 108 IPR000270 GO:0005515
Amo19g0548 1143 SUPERFAMILY CAD & PB1 domains 22 117 - -
Amo19g0548 1143 Gene3D - 184 348 IPR035897 -
Amo19g0548 1143 Pfam NB-ARC domain 432 566 IPR002182 GO:0043531
Amo19g0548 1143 Gene3D Ribonuclease Inhibitor 855 974 IPR032675 -
Amo19g0548 1143 PRINTS Disease resistance protein signature 383 398 - -
Amo19g0548 1143 PRINTS Disease resistance protein signature 887 903 - -
Amo19g0548 1143 PRINTS Disease resistance protein signature 526 540 - -
Amo19g0548 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 585 IPR027417 -
Amo19g0548 1143 SUPERFAMILY Toll/Interleukin receptor TIR domain 183 325 IPR035897 -
Amo19g0548 1143 MobiDBLite consensus disorder prediction 146 177 - -
Amo19g0548 1143 Gene3D - 491 575 IPR042197 -
Amo19g0548 1143 SMART PB1_new 20 108 IPR000270 GO:0005515
Amo19g0548 1143 Pfam TIR domain 186 364 IPR000157 GO:0007165
Amo19g0548 1143 Gene3D - 427 485 IPR027417 -
Amo19g0548 1143 Gene3D - 349 426 IPR027417 -
Amo19g0548 1143 Gene3D Ribonuclease Inhibitor 665 854 IPR032675 -
Amo19g0548 1143 ProSiteProfiles TIR domain profile. 185 349 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0548 Amo-Chr19 8170868 8174648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0548 142 924 WRKY Transcription Factor Family AT4G12020 32.639 4.16e-97 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0548 - - adu:107464414 2154.41