Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0545 AATTTTCATAGTTCCGTTTATCCTATTTGTTTCTCCATTCATTTTAGGAATGATGATGAACTCATCAGAAAGGTTGTGAATGATGTATTGAAAATGCGTGTCCTAAAGCACCACCTTGTGCCAACAGGCCTGGTTGGAATGAAAGAAATCCGTAAGAGTATTAAACCCTACATTAAGGAACACCGAATAATTGGAATTTGGGGTATGATCGGAGTAGGGAAAACAACCATAGCTAAAATGTTATTTGCAAAATCCTTTCCTCGTTATGAGCATGCTTGCTATGCGGAAAATGCAAAAGAATATACGCCTCAAAGGCTTCTCTCGGAGCTATTAAGGGAAGAAATTTCCACTGATGTAACAGGGTTGGTGAACAGTATTAGCAGCCTTAGCAATAAGAAAGTTCTCATTATCCTCGACAATGTGAAGGATTCTGATCAACCATTGTTAGAAGCAGTGTGTGAAGGGTACAAGAGCCATAGTAGAGAAAGTAAACTTATTATAACAACAACGCATAAGCATTTGATTGAAAAGAGAGTTGATTGGATATTTGAAGTCCAGCAATGGAGCGATTCAAAATCTATAGAGCTTCTTAGCCTGAAAGCATTCGAGGAAACCATCCCTCCAACGCGTTATGAGAGTCTGGTAAATGAGGTCGTTAAGTATGCAGGGGGAAATCCGTTAGCTCTGAACCTTTTGGGTTCAGATCTTCGATCCAAAAGCATTCAGTTCTGGGAAAGTACTTTGGAAAAACTCGAGAAGCATCCTGATAAGGGCATTCATACTGCCTTTAAAAAGATTTATGATGAATTGGAGGAGGTAGAGAAAGAGATATTTCTTGACATTGCATTCTTTTTCCATGGAGGAAAGAAAGATCTTGTCACAAGCATATTAAAAGCCTGTGATTTCTCACCAGTAAGAGGAATAGAGGTCCTTCAAGATAAAGCGTTGATTACCATTATTCCATATAAAGAAACAATCGAAATGCATGGCTTGTTAAGAAAAATGGCTTTTGAGATTGTACGCAAGGAAAACAGAAAAGACCCTAGAAAACGTAGCCGCTTGAGGGATATTGAAGACATTTGTGTTGTACTCCAAGAGAACAAGGAGACACTTGATACAATTGAAGGCATAATATTAGATTTGTCTCAAATTAAAGACTTGCATTTGAGTCCTGGCACACTTAAAAGGATGAATAACTTGAGATTTCTAAAATTATATATCCCCACGGGTCAGAGTTCTGGTAAGATGATCCTTCCTCCAGACCTTGAGCCATTTTCTGGTAAATTAAGGTACTTTGAATGGCATCAGTACCCTTTCAAGTCTCTTCCACCAGAGTTCTGTGCTAAGTTACTTGTTGAGATTCGCATGCCGCATAGCCATGTCAAGAAACTTTGGGAGAAGAAGCAGGAACTTCATAATTTAGAAGGGATCGACTTAAGTGAATGCAAAGAGTTAGAAGAGCTTCCAGATTTGTCTGGGACAAAAAGACTCAGATGGGTGAATCTCTCTGGTTGTGAGAGTTTGTCGATTCTTCATTCATCTGTTTTTTCCTCCAACACGCTTGTTTCTTTGATACTGGACAGGTGCACAAATTTGCAGTGTGTTAAGGCCGAAAGGCATCTGAATTCTCTGCAGCAGATAAGTGTCAAAGGCTGCTCAAATCTCAAAGAATTTGCAGTATCATCAGATTTAATTGAAAACTTGGATTTGAGTTACACAAAGGTTGAAAAGCTGGACGAATCAATTGGGAACCTGCAGAAGCTCAAATGCCTCAATCTAGAAGGTTCAAGAGTTAAGCATCTTCCAAAGGAGCTATCAGCACTAAAATTGCTTAAGGAGTTGAAGCATTCATATAGTGGACTAGTAATTGACAAGCAGCAGCTGCAAGACCTATTTAACGGCTTACACTCTCTACAAATACTACATTTGAAGGATTGTAGGAACTCATTTGAATTCCCCGACAACATCAACGCCATATCAAAATTGCGCGAGTTAAGGCTAGACGGAAGCAATGTGACCAGGTTGCCTGCAACCATCAAGTGTCTTCAAGAGTTGGAAATTTTGTCCCTAAAGAATTGCAGGTGTCTTAAGACACTGCCAGAGCTTCCAGACTCTATCAAGGAGTGCTCTACCGATAACTGCATATCATTGGAGTCTGTATCAGATCTAAAGCCTCTGGCTACAAAGATGGTGGGAAAGATGAAACGCATCTCATTCATTAATAGCTTGAAGTTCTCGGCAGGAGACACATTGCATTCGATCATGGAAGGCATCCATACAACAATGGTGAGTGCTGTATCTAGCAATGTCACGGTAAGAAGCTATGCAACCAAAGTCCATAGCTACAATTACAATAGTGTGGAGGTTTGTTTGCCCGGAGACACAATCCCAGAGCAATTTGCATATAAGACTGAGAAATCCTCCTCCATAACAATTGAACTCCCAGACTCTCCTTCCAACTTTCTTGGCTTTATCTATTCAGTTGTTCTTTCACCGCGTCATGGAATGAAGAAGCACGGTGCCAAAATCCGATGCGAATACAACATTACAGGAGGCACGAATTCTATGTGGGAGGACATAACCATAAGTGAATTGAACTCAGATCATTTGTATATATGGTATGATCCATTCCTCACTGACAAAATTCTTGGACAACATAAGCCAAGTTTTCATCTTGAGTTCAGTATTGTTACTGACACCGGAGAAGTTGATGACTCCATCATTATTAAAGAGTGTGGTGTTCAAATCATAAATGAATCAGACTTGCAGAGATTTTTGCTGGAATTAGATAAGAAGAAAAAGGACATGGAGGAGGAATCATCAAAGCAACAAAGAGAAATGAATGAACAATCATCTTTTGATAGGAAAACCGGTCAAGACCACACTAGCAATGTAGAACAAACGGAAGGTCTTGGGCAACAAAACCTAGGTTCTAAGAAACTGCAAGAGCTGCGCAAAGAAAAAAAGATTGTGCATGCCCAACCCATTAATTCCAGTTTACCTTCACATGGCGTGATCGTGGCTCCTAAGCTGACTGTGAAAGAACTCCGCCGCCACTTGAAGAAGGTAGACAAGAATGCAAAAGTTGAAGGCAACCCTGCAAGAGCAACTCAAGCTACAAATTTAGCTATGGAAACTTCTTACTCTTCTCATTCGAAGATTAAAGGCAAAAGAGTAGAAGATATCCGTTTGAACCAGGTTCCAACCGAAAATGCTTCTACTTCTATTGCACAAACTCGTGATAAAATTGCCATTCCCTCCTTGGATGATCCTCAAGTTGCTCTGGAGTTGCTAAAACACTTCGATGCATCAGCTAAACGCTTCCAAATAACAGAGTTTGTGGACAATCATGTTCTGTATCCATATGATCATTCTATAACAAAAGACCTTGATGTTTCGGCACTTTGTCGTTGGCTTCAAGTTCAAGGGCTTCGTTCAGTGAGCGTTGCGAGATACGCAGAGATGAAGTTCGAAGCAGCCAAACGGGAAAGAGAGGAAGAATTAAGACTTGCAAGAGAAGAAAATGCAAAGTTTGAAGAAGCTTTGAAAAGAATGGAGGACAGGATTTCACATGTTGAATCGTTGGAGAAAAGAGTTGATGATTTGAATTCGGAGGTGGCTTCTTGGAGAAGTAAATATGAAGAAACTGAAAAGTCGCTCAAAGAAACCGAAAAGAAACTTGAAGATGAGAAAGATGTAGGAGCTCAGAAAGAAACTCGTTGGAAAAGAAGAGAGAGTGAGCTGATTACGGAAGCGGCAACTTGCTCGTTTGAAAATTGCAGATCGCAGGTTTCCATTTTATACCCTGACATTGATTTAAGTAGGCTTGGACCTTTCAAGGAGATTCAGAATGGGCAGATAGTATCCCCCTCTGATACGGAGGAGACTGAAAGTGAAGAAGACACTAGGGCCTTTCAAGATGCTGCTCATGGCGATGCCGGTGTCTATTAA 3951 0.4037 NFHSSVYPICFSIHFRNDDELIRKVVNDVLKMRVLKHHLVPTGLVGMKEIRKSIKPYIKEHRIIGIWGMIGVGKTTIAKMLFAKSFPRYEHACYAENAKEYTPQRLLSELLREEISTDVTGLVNSISSLSNKKVLIILDNVKDSDQPLLEAVCEGYKSHSRESKLIITTTHKHLIEKRVDWIFEVQQWSDSKSIELLSLKAFEETIPPTRYESLVNEVVKYAGGNPLALNLLGSDLRSKSIQFWESTLEKLEKHPDKGIHTAFKKIYDELEEVEKEIFLDIAFFFHGGKKDLVTSILKACDFSPVRGIEVLQDKALITIIPYKETIEMHGLLRKMAFEIVRKENRKDPRKRSRLRDIEDICVVLQENKETLDTIEGIILDLSQIKDLHLSPGTLKRMNNLRFLKLYIPTGQSSGKMILPPDLEPFSGKLRYFEWHQYPFKSLPPEFCAKLLVEIRMPHSHVKKLWEKKQELHNLEGIDLSECKELEELPDLSGTKRLRWVNLSGCESLSILHSSVFSSNTLVSLILDRCTNLQCVKAERHLNSLQQISVKGCSNLKEFAVSSDLIENLDLSYTKVEKLDESIGNLQKLKCLNLEGSRVKHLPKELSALKLLKELKHSYSGLVIDKQQLQDLFNGLHSLQILHLKDCRNSFEFPDNINAISKLRELRLDGSNVTRLPATIKCLQELEILSLKNCRCLKTLPELPDSIKECSTDNCISLESVSDLKPLATKMVGKMKRISFINSLKFSAGDTLHSIMEGIHTTMVSAVSSNVTVRSYATKVHSYNYNSVEVCLPGDTIPEQFAYKTEKSSSITIELPDSPSNFLGFIYSVVLSPRHGMKKHGAKIRCEYNITGGTNSMWEDITISELNSDHLYIWYDPFLTDKILGQHKPSFHLEFSIVTDTGEVDDSIIIKECGVQIINESDLQRFLLELDKKKKDMEEESSKQQREMNEQSSFDRKTGQDHTSNVEQTEGLGQQNLGSKKLQELRKEKKIVHAQPINSSLPSHGVIVAPKLTVKELRRHLKKVDKNAKVEGNPARATQATNLAMETSYSSHSKIKGKRVEDIRLNQVPTENASTSIAQTRDKIAIPSLDDPQVALELLKHFDASAKRFQITEFVDNHVLYPYDHSITKDLDVSALCRWLQVQGLRSVSVARYAEMKFEAAKREREEELRLAREENAKFEEALKRMEDRISHVESLEKRVDDLNSEVASWRSKYEETEKSLKETEKKLEDEKDVGAQKETRWKRRESELITEAATCSFENCRSQVSILYPDIDLSRLGPFKEIQNGQIVSPSDTEETESEEDTRAFQDAAHGDAGVY* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0545 1316 PANTHER NB-ARC DOMAIN PROTEIN 17 802 - -
Amo19g0545 1316 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 802 IPR044974 GO:0006952
Amo19g0545 1316 MobiDBLite consensus disorder prediction 963 978 - -
Amo19g0545 1316 Coils Coil 1157 1240 - -
Amo19g0545 1316 Pfam C-JID domain 791 922 IPR045344 -
Amo19g0545 1316 Coils Coil 922 949 - -
Amo19g0545 1316 MobiDBLite consensus disorder prediction 936 978 - -
Amo19g0545 1316 PRINTS Disease resistance protein signature 469 485 - -
Amo19g0545 1316 PRINTS Disease resistance protein signature 222 236 - -
Amo19g0545 1316 PRINTS Disease resistance protein signature 128 142 - -
Amo19g0545 1316 PRINTS Disease resistance protein signature 63 78 - -
Amo19g0545 1316 SUPERFAMILY "Winged helix" DNA-binding domain 259 364 IPR036390 -
Amo19g0545 1316 CDD AAA 45 180 - -
Amo19g0545 1316 MobiDBLite consensus disorder prediction 936 962 - -
Amo19g0545 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 281 IPR027417 -
Amo19g0545 1316 MobiDBLite consensus disorder prediction 1218 1238 - -
Amo19g0545 1316 MobiDBLite consensus disorder prediction 1284 1316 - -
Amo19g0545 1316 Pfam NB-ARC domain 62 272 IPR002182 GO:0043531
Amo19g0545 1316 Gene3D Ribonuclease Inhibitor 564 745 IPR032675 -
Amo19g0545 1316 Gene3D Ribonuclease Inhibitor 335 563 IPR032675 -
Amo19g0545 1316 Gene3D - 188 271 IPR042197 -
Amo19g0545 1316 SUPERFAMILY L domain-like 378 720 - -
Amo19g0545 1316 Gene3D - 34 180 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0545 Amo-Chr19 8115308 8119988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0545 49 917 WRKY Transcription Factor Family AT5G45050 27.144 9.83e-70 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0545 - - aip:107614935 2415.96