Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0525 ATGTTGTCTCTTCCCTCTTCGTCAAGCCCAGACCTGCCCTCGTCGTCGTCGTTGTCGGTTTGGACCTGCTGCTGGATCGTCTTCTCGTCTCTGCACCGCCTATCAGTAACAGTTGCGTGGCGCTTCCCCCTGCTGGTGGGTCCACCACCGATCTGCTCTCTCCTCCCTCTAGTATCGATCCTAGGAAAAGTCAGGCAAAGAAGTCGATTTGTATTCCAGCAGCAGCATCACCAAGCAGTAGATAATGTGCAATTGATGAAAGACAGAGACAGTGGAGAAGGTAAGGGGTATGCTTTTGTGGCTTTCAAAACAAAAGAGGTTGCACAAAACGCCATAGAAGAGATACACAATAAGAAATATAAGGTTAAAGCTCTTTATGTGAAGAACATACTTGAGAATACTACTACCAAACAATTCAAGGAACTATTCTCTCGTCATGGAGAAGTAACAAAAGTAGTCATGCCACCTAGCAAAGCCGGAGGGAAGCGTGATTTTGGTTTCATCCATTATGCAGAGAGGTCAAGTGCATTAAAGGCCGTAAAAGACTCGGAGAAATACGAAATTGATGGTCAATTGCTCGAGGTTGTTCTTGTCAAACCTCAAGCTGAGAAAAAACCCAATATGGGTTACGACTACAATCCTGGACTTGCACATCTTGAGTTTGGTGGTGCCTTTGCTGGAAATCTGCATGGCTCGGTAATAGGTGTTGCAGGAGCTGGATATGGTGTTGCTCCTAGCTGGATGGTTCTGATGGCATTGCCAAATGGCAAAATCGGCTATGTCTTAGAACAGGGAGATGGGGTTGCTTTCTACTCTATTACCACATGA 828 0.4589 MLSLPSSSSPDLPSSSSLSVWTCCWIVFSSLHRLSVTVAWRFPLLVGPPPICSLLPLVSILGKVRQRSRFVFQQQHHQAVDNVQLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKVKALYVKNILENTTTKQFKELFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKAVKDSEKYEIDGQLLEVVLVKPQAEKKPNMGYDYNPGLAHLEFGGAFAGNLHGSVIGVAGAGYGVAPSWMVLMALPNGKIGYVLEQGDGVAFYSITT* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0525 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 132 IPR000504 GO:0003723
Amo19g0525 275 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 121 265 - -
Amo19g0525 275 Gene3D - 123 218 IPR012677 -
Amo19g0525 275 PANTHER GEO13361P1-RELATED 121 265 - -
Amo19g0525 275 PANTHER GEO13361P1-RELATED 81 123 - -
Amo19g0525 275 Gene3D - 67 122 IPR012677 -
Amo19g0525 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Amo19g0525 275 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 81 123 - -
Amo19g0525 275 SUPERFAMILY RNA-binding domain, RBD 122 211 IPR035979 GO:0003676
Amo19g0525 275 SUPERFAMILY RNA-binding domain, RBD 79 120 IPR035979 GO:0003676
Amo19g0525 275 SMART rrm1_1 43 123 IPR000504 GO:0003723
Amo19g0525 275 SMART rrm1_1 124 196 IPR000504 GO:0003723
Amo19g0525 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 122 IPR000504 GO:0003723
Amo19g0525 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 192 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0525 Amo-Chr19 7882069 7885122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0525 91 216 Eukaryotic Initiation Factors Gene Family AT4G34110 26.174 1.58e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0525 K13161 - gmx:100800974 197.208