Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0489 ATGGCAAAAGATGATGATGAAATGCCTAAGATCCTTCATGGAACAATTGAAGCTACCATCTTCAATGCCTCATCACCTCCCTCTTCTTCTTCATTTCCCTTCAAGTGTCTATGTTTAAAAGCAGAAAAACCAGCTTATGTGACAATCAAGATAGACAAGAACAAGGTTGCAAAAACAATTGAAGACATTGATCGTGTATGGAACCAAACCTTCAAGATCCAATGTGCATACCCAATTGATTCAACAATCACAATAACACTCAAAACAAAAACTTGCACATTAGGAAAGTACCACATAAAAGGCCAAAAGCTTCTAGAAGAAGGAGGCTTAATCAATGGATTCATCCCTCTACTAATGGAAGATAATAATGGGAAAAGACCAAACCAACAAAAACTCAAATTGAAGTTCCAATTGTGGTTCAATTCAGCTGAAGAATTATTGGAACCAATAAGTTGGGCAAAGATAATGAGGTTTGGGAATTCTTGTCAAGGAATGAGAGATTCTTGTACTACATTTCCACAAAGGTCTAATTGTTATGTGAAACTATATCATGATGCTCATCATTGTTCTACTTTTCAACCAAATATTGGTTTATTATGTGAAGCTCCAAGGAAGCTATGGGAGGATGTGTATAAAGCTATTGAGGGTGCAAAGCATATAATTTATATTGCAGCCTGGTCCCTCAATCCAAACTTGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCCAAAGGAATAAAGCTTGGTGATTTATTGAAGAAGAAAGCAGAGGAAGGTGTTGCTGTGAGGATTATGCTTTGGGATGATGAAAAATCTTTGCCCTTTATTAAGAAGAACAAAGGTGTAATAACAAACAGTAATAATACACAACATCATGATGATGATGATGATGATGATAATGATGATGCTTTTGCTTACTTCAAGAAAACAAGAGTAATATGCACAAAATGTCCTAGGTTGCACCACAAATTCCCAACACTCTTTTCTCACCACCAAAAGACTATAACATTGGACACAAAATCACCAAATAATTCTAGTGATGATGATGGTGAAGATGAGAGAGAACTAATGAGCTTTTTGGGAGGATTAGATTTGTGTGAAGGAAGATATGACACTGAGCAACATTCATTGTTTCACACACTGATTAGGGAATCACATTGTTATGATTTTTACCAACCAAACATTGGAGGAGCTAGTCTTAACAAAGGAGGGCCAAGAACACCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGTTGACCAACTTTGACCAAAGGTGGAGAAAGCAATGTGATTCTTCTTTTCTTGTTCCTACTACCACCATTGCAAATGTTCTTGGGCCAAGGAATAGCACAACTTCAAACACCTCCATAGACAAGGATTGGAATTGGAAAGTTCAAGTATACAGGTCAATTGATGATGTGTCAGCTAGCTTCCAAAGCCAATCATTTAGAGAGTTACATGTAGAAAGGAGCATCCATGAGGCTTATGTTGAAGCAATAAGAAGTGCTGAAAAGTTTATATACATTGAGAATGAATATTTCATTGGAGGGTGCCAATTATGGGACAAAGATAGGGATAGTGGATGCACAAACCTAATCCCAATTGAAATTGCACTCAAAATTGTTAGCAAGATCAAAGCAAAAGAGAGGTTTGCAGTGTACATAGTGATACCAATGTGGTCAGAGGGAGTGCCTAAAAGTGAAGCAGTTCAAGATATATTGCATTGGACTAGAGAAACTATGACTATGATGTATAGGTTAATTGGAGAAGCATTGAAGGAGAATGGGGAAAATAATAATAATGGTCACCCTAAAGATTATTTGAATTTCTTTTGCCTTGCAAATAGGGAACAAAAGGGGAGTGGGGAGTATATTCCACAACATGCTCCTCATCCTGGAACACTTTATGGGAGTGCACAAAGTAATAGGAGGTTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGATGAATACATACTAATAGGATCAGCAAATGTGAACCAAAGATCCATGGATGGAGAAAGGGACACTGAGATTGCCATAGGATGCTACCAATTATCTCAAGATAATAAACATGAAGGTATGAGGCATGGTGAGATTCATGCATTTAGAATGTCACTATGGTATGAACACACTGCTAGTAGTGCCAATTATGACTTGTTCTTGGAGCCACAAAGCTTGGAATGTGTCAACATTATGCGTTCAATTGGTGACAAAATGTGGCACATTTACATCAATGATGAAATTGTGGACATGGAAGGTGTGCACCTTGTGACTTACCCTATAAGTGTGACACAAGATGGGTGTGTGAAGGATCTTCCTGATGGAGTTCGTTTTCCTGACACAAATTCTAGAGTGAAGGGAAAGAGATCTCAAACTTTGCCCCCCAACTTTACAAATTAA 2433 0.3802 MAKDDDEMPKILHGTIEATIFNASSPPSSSSFPFKCLCLKAEKPAYVTIKIDKNKVAKTIEDIDRVWNQTFKIQCAYPIDSTITITLKTKTCTLGKYHIKGQKLLEEGGLINGFIPLLMEDNNGKRPNQQKLKLKFQLWFNSAEELLEPISWAKIMRFGNSCQGMRDSCTTFPQRSNCYVKLYHDAHHCSTFQPNIGLLCEAPRKLWEDVYKAIEGAKHIIYIAAWSLNPNLVLVRDPQTEIPHAKGIKLGDLLKKKAEEGVAVRIMLWDDEKSLPFIKKNKGVITNSNNTQHHDDDDDDDNDDAFAYFKKTRVICTKCPRLHHKFPTLFSHHQKTITLDTKSPNNSSDDDGEDERELMSFLGGLDLCEGRYDTEQHSLFHTLIRESHCYDFYQPNIGGASLNKGGPRTPWHDAHACVIGEAAWDVLTNFDQRWRKQCDSSFLVPTTTIANVLGPRNSTTSNTSIDKDWNWKVQVYRSIDDVSASFQSQSFRELHVERSIHEAYVEAIRSAEKFIYIENEYFIGGCQLWDKDRDSGCTNLIPIEIALKIVSKIKAKERFAVYIVIPMWSEGVPKSEAVQDILHWTRETMTMMYRLIGEALKENGENNNNGHPKDYLNFFCLANREQKGSGEYIPQHAPHPGTLYGSAQSNRRFMVYVHSKFMIVDDEYILIGSANVNQRSMDGERDTEIAIGCYQLSQDNKHEGMRHGEIHAFRMSLWYEHTASSANYDLFLEPQSLECVNIMRSIGDKMWHIYINDEIVDMEGVHLVTYPISVTQDGCVKDLPDGVRFPDTNSRVKGKRSQTLPPNFTN* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0489 810 Gene3D Endonuclease Chain A 492 703 - -
Amo19g0489 810 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Amo19g0489 810 MobiDBLite consensus disorder prediction 790 810 - -
Amo19g0489 810 PANTHER PHOSPHOLIPASE D ALPHA 7 809 - -
Amo19g0489 810 MobiDBLite consensus disorder prediction 796 810 - -
Amo19g0489 810 Pfam PLD-like domain 654 691 IPR025202 -
Amo19g0489 810 Pfam Phospholipase D C terminal 729 799 IPR024632 -
Amo19g0489 810 SUPERFAMILY Phospholipase D/nuclease 466 728 - -
Amo19g0489 810 SMART pld_4 328 371 IPR001736 GO:0003824
Amo19g0489 810 SMART pld_4 653 680 IPR001736 GO:0003824
Amo19g0489 810 Gene3D Endonuclease Chain A 193 477 - -
Amo19g0489 810 PANTHER PHOSPHOLIPASE D 7 809 IPR015679 -
Amo19g0489 810 SUPERFAMILY Phospholipase D/nuclease 174 442 - -
Amo19g0489 810 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 121 IPR035892 -
Amo19g0489 810 PIRSF PLD_plant 1 810 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0489 Amo-Chr19 7184435 7189950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0489 35 809 Phospholipase D Gene Family (Wang group) AT1G55180 57.033 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0489 K01115 - gmx:100812642 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0489 19 7184435 7189950 Amo19g0489 19 7184435 7189950 ECH
Amo19g0489 19 7184435 7189950 Amo09g0207 09 2270457 2275942 hybridization
Amo19g0489 19 7184435 7189950 Amo19g0489 19 7184435 7189950 PCT
Amo19g0489 19 7184435 7189950 Amo09g0207 09 2270457 2275942 PCT
Amo09g0207 09 2270457 2275942 Amo19g0489 19 7184435 7189950 PCT