Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0483 ATGGCTTACTATGGGAACACGATAGGTGATGATTTCACATCATGGAGTAGTTGTCTAAAGAACTTTGATTTCACTTCATTATGTACTCAAAGAAGCATAGTGGGGATCACAAATCTACTTTTTGTGTTTATGTTCTACACCGTTTTGCTTATTAGTTTCATCAAAAGAAGTTCTTCAAGAAATGGCAATACTAGCGACAGAAGAAAGAACAAGTTTTTCATATTTGTATCAGTTTGTTGTGCTCTTATCAGCATTGGTTTTGTCACAATTGGTCTATGGAATCACATGAGCTTGTTATCTTACATTGTAAGAGGGATTGTTTGGATCTCTTTATCATTTTCCTTGATTCTTCAGAGACAAAAATGGGTGAAGACTCTCAGCACTTTCTGGTGGATATGTTCTTCTATTTTGGTGTCAATTTTGGATATTGAAATTCTTTTCAAGGATCATGCAATTGAGGTTCTTGATGTGGTGCTTTGGCTTGTGAATTTGTTACTTCTATTATGTGCTTTTCAAAATCTTGGTTTCTTTGTCACACAAAGTGATGATAACCAAGGTGATGCAGATTTATCTGAGCCTCTTTTGGATCGAAAAGACGGCGAAAATGCACGAACAGGACTATGCAATGCTTCCATTTTGAGTAAATTGATCTTCTCTTGGATTAACCCTTTGCTCAAATTGGGTTACTCAAAGGCACTATCACTTGAAGACATTCCTTCAGTTGTTCCTGAAGATGAAGCAGATTCTGCACACCAAGTGTTTGTTCTTGCATGGGAGAATCTTTTAAAGGAAAAGAGAAAGAACAATAATAATAGTACCAAGAACTTGGTTCTTTGGTCTCTAGCTAGAGTTTACTTAAAAGAGAATCTTTTGATTGCAGTCTATGCATTGATTAGAACTGTTTGTGTTGTGGTTTCTCCACTTATACTCTATGCTTTTGTGAACTATTCAAATAGAAGTAGCACTGAGAAAAATCTCAAAGATGGTCTTTCTATATTGGGGTGTTTGATTGTCACAAAGGTGTTTGAAACATTGTCTCAAAGACATTGGTTCTTTGATTCAAGGAGATCAGGTATGAAGATGAGGTCTGCTCTGATGGTGGCAGTGTATCAGAAACAGCTAAGGCTTTCTAGCCCTGCTCGAATGAGGCACTCCGCCGGCGAAATTGTTAATTACATTGCGGTGGATGCATACAGAATGGGAGAGTTTCCTTGGTGGCTTCATGTAACATGGGCCTGTGTATTGCAGCTTATTATGTCTCTTATAGTCTTGTTCGGTGTTGTAGGTCTCGGTGCTCTGCCTGGCCTAATCCCTTTCATAATCTGTGGACTACTCAATGTGCCATTTGCAAAGGTGATACAAAAGTCTCAGTCTCAGTTCATGTTAGCACAAGATGAGCGCTTAAGATCAACTTCAGAGATACTTAACAGCATGAAGATCATCAAGTTACAATCATGGGAAGAAAAATTCAAGAGCTTGGTTGAGTCGCTTCGCGCGAAAGAATTCATATGGTTGTCTAAGACACAGATCATGAAGGGTTATGGCTCAATTCTTTATTGGATGGCTCCTACAATTGTTTCTGCTGTTGTCTTCCTCGGATGTGTTCTGTTCCATAGTGCTCCATTGGATGCAGGGACAATTTTCACAGTTCTTGCAACATTGAGGATCATGTCGGAACCAGTTAGGATGATCCCTGAGGCTCTCTCTGTTCTTATCCAAGTTGTGGTATCTTTCGATCGGCTTAATACCTTTTTGCTTGCTGAAGAGTTAGGCAGTAATGAAATTGTAAGGAGTGTTAAGCAAAGTTCAGTTGGTGACAACAATGCTGTAGAAATTGAAGGTGGAAACTTTACTTGGGATCAGGGGTCAGTGTCCCCAACTTTAGCTGATGTGAATTTGGAAGTGAAATGGGGGCATAAAGTAGCAGTTGTTGGGCCAGTTGGAGGTGGAAAATCATCTCTCTTGCATGCAATACTTGGAGAGATTCCAAAGATTTCAGGAAATGTTAATGTATATGGCACCATAGCATATGTTTCTCAAATTTCTTGGATCCAAAGTGGGACAGTTAGAGATAACATACTCTTTGGCAAGCCAATGGACAAGAAAAGATATCAGAATACCATTAAGGCCTGTGCCTTGGATAAGGACATCAATGATTTCAGCCATGGCGATCTGACAGAAATCGGTCAGCGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATCCAACTAGCTAGAGCAGTGTACAATGATGCTGACATTTATCTCTTTGATGATCCTTTCAGTGCAGTTGATGCGCACACTGCTGCTCATTTATTCAATGAATGTGTCATGACAGCTCTTAGGGAAAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATAAAATCCTGGTGATGGAGGGAGGGAGAATTACTCAGTCAGGTAGTTATGATGATATCCTAACAGCCGGGACAGCATTCGAACAACTTGTGACTGCTCACAAAGATGCAATAACAGAGTTTGATCGGAACAACCAAAACCAAGGAGGACCTGAAAATAATAAGGCTATGACTCCTCCAGAAGAGTCTCAAGGTTCTAATATCTCTAAAACTCAAAGTGAGGGTGAGATTTCTTTCAAGGGTCAAACTGGCTCACAACTCACACAAGAGGAAGAGACAGAGATTGGTGATCTTGGGTGGAAGCCATTTTGGGATTACATTTCCTTCTCCAAGGGGCAACTTATGCTGTGTTTGATGATATTAGGACAATTTGCTTTTGTTGCTTTGCAAGCTGCTTCAACCTTTTGGCTTGCACTAGCAATTGAGATGCCAAAAGTGACTAGTGCTGTTTTGATTGGGGTTTATGCATTGGTGTCATTTAGCAGTGCTATTTTTGTGTATCTGAGGTCTTTGGTATCTGCACTTCTTGGATTAAAAGCTTCATCAGCCTTCTTCTCTAGTTTCAATAAGGCTATCTTCAATGCTCCTATGTTGTTCTTTGATTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTGAGTATTCTGGATTTTGACATACCTTATTCCATCACTTTTGTAGCATCTGTAGCTATTGAAATTGTGGTGATCATTGGTATAATGGCTTCAGTCACATGGCAAGTTCTAATAGTTGCAATTCCTGCTACACTAGCATCAAAATATGTTCAGGGATATTATCAAGCCTCTGCAAGAGAAATAATAAGGATCAATGGAACAACCAAAGCACCAGTGATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTTAGAGCATTCAACATGGTGGATAGATTTGTCAAGAACTACCTAAAGCTTGTGGACACAGATGCATCACTATTCTTTCATTCTAATGTGACCATGGAATGGTTAATTGTAAGGATTGAAACACTTCAAAACTTGACAGTCTTCACTGCAGCCTTGTTACTTATTCTAGTTCCTATGGATTATGTGTCCCCAGGGCTTGTGGGACTTTCACTTTCTTATGCATTCACATTGACACAAGCACAAATATTTTGGACAAGATGGTTTTGCAACTTATCAAACTATGTTATCTCTATTGAAAGAATCAAACAATTCATTCACATACCAGCTGAGCCTCCTGCTATTGTGGAGGATAACAGGCCTCCAACTTCATGGCCATGGAAGGGTAGAATTGATCTTCAATCCTTAGAGATTAGATATCGTCCGAATGCACCAATAGTCCTGAAAGGGATCACTTGCACATTCAAAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAAACAACACTTATAAGTGCTCTGTTTCGATTGGTTGAGCCTTCAAGAGGTAACATTATTATTGATGGGATTGACATATGCTCATTGGGGTTGAAGGATTTGAGAATGAAGCTTAGTATTATCCCTCAAGAAGCAACTCTTTTCAAGGGTAGCATTAGAACAAACTTGGACCCCTTAGGCCTTTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAGTGTCAACTTAAGGAGACAATCAGCAAGCTACCAAGTCTCTTAGACTCATCAGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAGCGGCAACTGTTTTGTCTTGGAAGAGTACTTCTTAAGAGGAACAGAATTCTTGTTCTTGATGAAGCAACTGCATCCATTGATTCTGCTACAGATGCCATTCTACAAAGAATTATTAGAGAAGAATTTGCAGAATGCACTGTAATAACTGTGGCTCACAGAGTTCCAACTGTTATAGACAGTGACATGGTCATGGTCCTATCTTATGGGAAAACTATTGGAATATGA 4338 0.3974 MAYYGNTIGDDFTSWSSCLKNFDFTSLCTQRSIVGITNLLFVFMFYTVLLISFIKRSSSRNGNTSDRRKNKFFIFVSVCCALISIGFVTIGLWNHMSLLSYIVRGIVWISLSFSLILQRQKWVKTLSTFWWICSSILVSILDIEILFKDHAIEVLDVVLWLVNLLLLLCAFQNLGFFVTQSDDNQGDADLSEPLLDRKDGENARTGLCNASILSKLIFSWINPLLKLGYSKALSLEDIPSVVPEDEADSAHQVFVLAWENLLKEKRKNNNNSTKNLVLWSLARVYLKENLLIAVYALIRTVCVVVSPLILYAFVNYSNRSSTEKNLKDGLSILGCLIVTKVFETLSQRHWFFDSRRSGMKMRSALMVAVYQKQLRLSSPARMRHSAGEIVNYIAVDAYRMGEFPWWLHVTWACVLQLIMSLIVLFGVVGLGALPGLIPFIICGLLNVPFAKVIQKSQSQFMLAQDERLRSTSEILNSMKIIKLQSWEEKFKSLVESLRAKEFIWLSKTQIMKGYGSILYWMAPTIVSAVVFLGCVLFHSAPLDAGTIFTVLATLRIMSEPVRMIPEALSVLIQVVVSFDRLNTFLLAEELGSNEIVRSVKQSSVGDNNAVEIEGGNFTWDQGSVSPTLADVNLEVKWGHKVAVVGPVGGGKSSLLHAILGEIPKISGNVNVYGTIAYVSQISWIQSGTVRDNILFGKPMDKKRYQNTIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAHLFNECVMTALREKTVILVTHQVEFLSEVDKILVMEGGRITQSGSYDDILTAGTAFEQLVTAHKDAITEFDRNNQNQGGPENNKAMTPPEESQGSNISKTQSEGEISFKGQTGSQLTQEEETEIGDLGWKPFWDYISFSKGQLMLCLMILGQFAFVALQAASTFWLALAIEMPKVTSAVLIGVYALVSFSSAIFVYLRSLVSALLGLKASSAFFSSFNKAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVAIEIVVIIGIMASVTWQVLIVAIPATLASKYVQGYYQASAREIIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFVKNYLKLVDTDASLFFHSNVTMEWLIVRIETLQNLTVFTAALLLILVPMDYVSPGLVGLSLSYAFTLTQAQIFWTRWFCNLSNYVISIERIKQFIHIPAEPPAIVEDNRPPTSWPWKGRIDLQSLEIRYRPNAPIVLKGITCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPSRGNIIIDGIDICSLGLKDLRMKLSIIPQEATLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFAECTVITVAHRVPTVIDSDMVMVLSYGKTIGI* 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0483 1445 CDD ABCC_MRP_domain1 610 810 - -
Amo19g0483 1445 MobiDBLite consensus disorder prediction 842 891 - -
Amo19g0483 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1180 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0483 1445 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 96 1440 - -
Amo19g0483 1445 Pfam ABC transporter 1247 1395 IPR003439 GO:0005524
Amo19g0483 1445 Gene3D - 586 856 IPR027417 -
Amo19g0483 1445 Gene3D - 1213 1444 IPR027417 -
Amo19g0483 1445 SUPERFAMILY ABC transporter transmembrane region 901 1212 IPR036640 GO:0005524|GO:0016021
Amo19g0483 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1219 1443 IPR027417 -
Amo19g0483 1445 SUPERFAMILY ABC transporter transmembrane region 278 581 IPR036640 GO:0005524|GO:0016021
Amo19g0483 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 833 IPR003439 GO:0005524
Amo19g0483 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 290 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0483 1445 Gene3D ABC transporter type 1, transmembrane domain 258 585 IPR036640 GO:0005524|GO:0016021
Amo19g0483 1445 Gene3D ABC transporter type 1, transmembrane domain 879 1211 IPR036640 GO:0005524|GO:0016021
Amo19g0483 1445 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 96 1440 - -
Amo19g0483 1445 CDD ABC_6TM_ABCC_D2 914 1205 IPR044726 GO:0140359
Amo19g0483 1445 Pfam ABC transporter transmembrane region 291 560 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0483 1445 Pfam ABC transporter transmembrane region 947 1179 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0483 1445 CDD ABCC_MRP_domain2 1228 1443 - -
Amo19g0483 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1445 IPR003439 GO:0005524
Amo19g0483 1445 CDD ABC_6TM_ABCC_D1 291 581 IPR044746 GO:0140359
Amo19g0483 1445 ProSitePatterns ABC transporters family signature. 735 749 IPR017871 GO:0005524
Amo19g0483 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 832 IPR027417 -
Amo19g0483 1445 Pfam ABC transporter 628 762 IPR003439 GO:0005524
Amo19g0483 1445 SMART AAA_5 1256 1441 IPR003593 -
Amo19g0483 1445 SMART AAA_5 637 810 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0483 Amo-Chr19 6940771 6947694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0483 610 854 Calmodulin-binding Proteins AT2G36910 25.283 1.02e-19 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0483 - - gmx:100784827 2048.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0483 19 6940771 6947694 Amo19g0483 19 6940771 6947694 ECH