Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0482 ATGGCATGCTTTGGAATCACAAGAGGAACATGTCTTGGAAATTTCAGTTGGACTTCAATTTCCACTCAAAGGACTATAATAGACACAACCAACCTAATTTTTCTATGTATTTTCTATATATCTTTGTTCATAAATTTGATAATGAGAATCCCTAGTGGTAGCTCCAGAAAGGGGTGGCTTCATTTAGTTACTTCACTCTGTTGTGCTTTTTTGAGCACTACCTGTTTGATTAATTGCTTATGGAGTCTCATAGCCAAATCTAATGGTTCCAATCAGCTGAGTTTGATTTACTTTATAAGATCACTGGTTTGGATTTCCTTAACTGTTTCTTTCCTTGTTCAGAAATCCCAATGGACTAAAATTTTAACCACTATTTGGTGGGTGTGTTCATGTGCATTGGTCTCAGCACTAAACATTGAAATTCTAGTTAGAGAGCAAAAGCTTGAGATTTATGATATGATGATATGGCCAGTACATATTCTYCTTGTGATCTATGATTTCCATAACCATGGCTACTTTGTTCAACAACAAGTCTCAGATTCTAGTTTATCTGATCCTTTACTAGCTCATAAGGTTGAGCATAATCAAGAAACAGAATTAGGCCATGGCAACATTCTCAATAGAATGACATTCTCTTGGATCAATTTGTTACTGAAATTGGGTTACTCAAAGCCACTAACACTTGAAGACATCCCTTCCCTTGCTTCTGAAGATGAAGCTGAGATTGGTTATCAAAAGTTTGCTCATGAATTGGACTCCCTTTTGAGGGAGAGGAGCAAGAATGATTCTACAAACTTGGTTCTTTGGTRGATCGCGCGAGTTTACTTTAAAGAAAACATATTTATAGCCATTTGTGCGGTTCTCAGGACAATTTGTGCTGTAGCTTCTCCRTTACTTGTCTATTCCTTTGTGAAATACTCCAATTCCATTGAGCAAGACTTGAAATGGGGACTAACCATAGTGYCATGTCTAGTACTRGCCAAGGTGGTTGAGTCTATGTCTCAGAGGCATTGGTTTTTCAACTCAAGGAGGTCAGGGATGAAAATGAGATCAACTTTAATGGCAGCAGTATATCAGAAGCAGTTAAAGCTTTCTGTTTGGGGTAGGAGAAGGCATTCAACTGGTGAGATAGTGAATTATATTGRGGTTGATGCATATCGAATGGGAGAATTTCCATGGTGGTTTCATATAGCCTGGAGTTCTGCKTTGCAAGTTTTTCTGGCTGTTTGTGTTCTTTTTGGTGTTGTTGGTCTTGGTGCACTTCCTGGTTTAGTCCCTCTTCTCATTTGTGGAATCATCAATGTTCCATTTGCAAAGATCCTACAAAGATGTCGTTCTGAGTTTATGGTTYTACAGGATGAGCGTCTGAGATCAACTTCAGAGATTCTAAGTAGCATGAAAATCATAAAGTTACAATCATGGGAGGAAAAGTTCAAGAAACTAGTTGAATCGCTTCGCGCTAGAGAGTTCAAATGCTTGACTAAGGCACAGTTAATGAGAGCTTTTGGGGCATTCATTTATTGGATGTCTCCTACCATAATCTCTTCTGTTATCTTCARGGGGTGTGTTCTTTTCCAAAGTGCACCTTTGAATGCTGAAACCATCTTCACAATTCTTGCAGTATTGAAAAGCATGGGAGAACCTGTTAATCTGATTCCAGAGGCACTATCTGTTCTTATCCAAGTCAAAGTCTCCTTCGATCGCCTCAACGCATTTTTGCTGGATGATGAGATAAAAGTTGATGATGGTAGAAGAAATGCAACACTGAGTTCTTGTAACAGTGTTGAAATTATTGCAGGAAATTTCAGCTGGAATGAGGAATCATTGCATCCAACTCTGAGAGATGTGAAACTAGATATAAAATGGGGTCAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAAACAGCTCTCTTATATGCAATTCTTGGAGAAATACCAAAAGTTTCAGGAACAGTTAGTGTGGGTGGAACTTTTGCATATGTTTCCCAAATTCCTTGGATCCAAAGTGGTACCATTCGCGATAATATCCTCTATGGAAAGCCTATGGAGAAAACCAGATATGAATATAGCATTAAGGTATGTGCCTTGGATAAGGATATTGATGGATTCAGCCATGGTGATCTCACAGAAATCGGTCAGCGGGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTCGCTCGAGCCGTCTATAGTGATGCAGATATCTATCTCCTTGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCTTCCATTCTGTTCAATGATTGTGTGAAGACTGCTTTAAGAAGCAAAACTGTTATTCTAGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATCAAATTCTGGTGATGGAGAGAGGAGAAATAACTCAATCAGGAAGTTATAAAGATCTTTTGATTGCTGGAACAGCCTTTGAACAACTATTGAATGCTCACAGAGATGCAATCACAGGGATGAAGAAAAGGAATGAGAAGGAGAGAGTTCTTGAAAATAWAGTTGCAGTTCATCAAGAGGATTCACATGGTTTGAATCTTGCAAACCGTGGAAGTGAAGCTGACATTTCCTCRAAAGTTCAACTTACACAAGAGGAAGAAAAGGAGATTGGTGATATTGGATGGAAGACATTCTGTGATTACATTTTATTCCCTAAGGGATCATGGCTTCTATGCTGTTGCATATTAGCACAATTCTCTTTTGTTGGTCTGCAAGCTGCATCAACTTTTTGGCTTGCACTAGCAATTGAGATACCAAAAGTAACAAGTAGCATATTGATTGGAGTTTATGCTGTGATTTCCTTTTTAAGTGTTGTATTTTCATATCTAAGGTCTTTCTTTGGTGCACGCCTTGGTTTGAAAGCTTCTAAGGCTTTCTTCTCTGCTTTCAATGATGCCATCTTTGGTGCTCCTATGTTGTTCTTTGACTCAACACCTGTAGGGAGGATTCTAACCAGAGCTTCATCAGATTTTAGTATTTTGGATTTCGATATGGCTTTCGCAACCTTCTTTGTAATAGGCGAYATAATTGAACTTTCAACAATGATTGGGATCATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCCATTCTTGCACTGGCGGCTTCAAAATATCTTCAGGGTTATTATCAAGTTTCTGCAAGGGAACTTATGAGAATCAATGGAACTACAAAAGCTCCTCTTATGAATTTTACAGCTGAGACATCACTTGGTGTGATTACTATAAGGGCTACCAAGATGATGGACAGATTTTTCAAAAGCTACCTAAAYCTTGTTGACACAGATGCCACACTGTTCTTTCATTCTAATGCTGCCACAGAATGGTTAATTTTAAGGATTGAAGCCTTACAGAACTTGACACTCTTCACTGCAGCTTTGTTGCTTATTTTACTTCCTAAGGGATATGTGGCCCCTGGTCTTGTCGGAGTTTCGCTATCTTATGCATTTTCATTGACAGCCACCCAAGTTTTTCTGACCAAGTGCTTCTGCAACTTATCAAACTATTTGATCTCTCTTGAAAGAATCAAGCAATTTATTAACKTACCATCRGAGCCTAGTGCAATTGTGGAGGACTTYAGGCCACCATCTTCTTGGCCGTCGAGGGGTCGGATTGATCTCCAATCTRTGGAGATTAGATATCGTCCAAATGCTCCATTAGTCCTTAAGGGCATATCTTGTACATTTAAAGAAGGGAGTAGAGTGGGAGTGGTAGGAAGAACRGGAAGTGGAAAAACTACACTTATAAGRGCTTTATTCCGCTTAGTTGAGCCTGCAGGAGGTGATATTCTTATAGATGGGATCAACATATGCTCAATAGGGCTGAAAGATTTGAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGCAGCATTAGAACAAACTTGGACCCTTTAGGTCTCTACACTGATCATGAAATATGGAAGGCTCTAGAGAAATGTCAGCTTAAGGAAACAATTAGTTGTCTACCAAATCTCTTGGACTCTTCTGTGAGTGATGAAGGTGAAAACTGGAGTGTAGGGCAGCGCCAACTGTTTTGTCTAGGAAGAGTACTTCTTAAGAGGAACAGAATTCTTGTGCTGGATGAAGCTACTGCCTCCATTGATTCCACCACCGARGCCATTTTACAACGAGTTATCAGAGAAGAATTCTCAGAATGCACAGTTATAACGGTGGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTTATGGGAAACTGATTGAATATGATGAGCCTTCAAAGCTTATGGAGAGAGATTCTTCATTCTATAAGCTGGTGTCAGAATATTGGTCCAACTGTAATAGGAATATTCTCCAAAAAGACTAG 4374 0.3919 MACFGITRGTCLGNFSWTSISTQRTIIDTTNLIFLCIFYISLFINLIMRIPSGSSRKGWLHLVTSLCCAFLSTTCLINCLWSLIAKSNGSNQLSLIYFIRSLVWISLTVSFLVQKSQWTKILTTIWWVCSCALVSALNIEILVREQKLEIYDMMIWPVHILLVIYDFHNHGYFVQQQVSDSSLSDPLLAHKVEHNQETELGHGNILNRMTFSWINLLLKLGYSKPLTLEDIPSLASEDEAEIGYQKFAHELDSLLRERSKNDSTNLVLWXIARVYFKENIFIAICAVLRTICAVASPLLVYSFVKYSNSIEQDLKWGLTIVXCLVLAKVVESMSQRHWFFNSRRSGMKMRSTLMAAVYQKQLKLSVWGRRRHSTGEIVNYIXVDAYRMGEFPWWFHIAWSSALQVFLAVCVLFGVVGLGALPGLVPLLICGIINVPFAKILQRCRSEFMVLQDERLRSTSEILSSMKIIKLQSWEEKFKKLVESLRAREFKCLTKAQLMRAFGAFIYWMSPTIISSVIFXGCVLFQSAPLNAETIFTILAVLKSMGEPVNLIPEALSVLIQVKVSFDRLNAFLLDDEIKVDDGRRNATLSSCNSVEIIAGNFSWNEESLHPTLRDVKLDIKWGQKIAVCGPVGAGKTALLYAILGEIPKVSGTVSVGGTFAYVSQIPWIQSGTIRDNILYGKPMEKTRYEYSIKVCALDKDIDGFSHGDLTEIGQRGINMSGGQKQRIQLARAVYSDADIYLLDDPFSAVDAHTASILFNDCVKTALRSKTVILVTHQVEFLSEVDQILVMERGEITQSGSYKDLLIAGTAFEQLLNAHRDAITGMKKRNEKERVLENXVAVHQEDSHGLNLANRGSEADISSKVQLTQEEEKEIGDIGWKTFCDYILFPKGSWLLCCCILAQFSFVGLQAASTFWLALAIEIPKVTSSILIGVYAVISFLSVVFSYLRSFFGARLGLKASKAFFSAFNDAIFGAPMLFFDSTPVGRILTRASSDFSILDFDMAFATFFVIGDIIELSTMIGIMVSVTWQVLIVAILALAASKYLQGYYQVSARELMRINGTTKAPLMNFTAETSLGVITIRATKMMDRFFKSYLNLVDTDATLFFHSNAATEWLILRIEALQNLTLFTAALLLILLPKGYVAPGLVGVSLSYAFSLTATQVFLTKCFCNLSNYLISLERIKQFINXPSEPSAIVEDFRPPSSWPSRGRIDLQSXEIRYRPNAPLVLKGISCTFKEGSRVGVVGRTGSGKTTLIRALFRLVEPAGGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYTDHEIWKALEKCQLKETISCLPNLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSTTEAILQRVIREEFSECTVITVAHRVPTVIDSDMVMVLSYGKLIEYDEPSKLMERDSSFYKLVSEYWSNCNRNILQKD* 1458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0482 1457 Pfam ABC transporter 613 747 IPR003439 GO:0005524
Amo19g0482 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 280 561 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0482 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 817 IPR027417 -
Amo19g0482 1457 Pfam ABC transporter transmembrane region 927 1155 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0482 1457 Pfam ABC transporter transmembrane region 280 541 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0482 1457 Gene3D - 570 843 IPR027417 -
Amo19g0482 1457 ProSitePatterns ABC transporters family signature. 720 734 IPR017871 GO:0005524
Amo19g0482 1457 Gene3D ABC transporter type 1, transmembrane domain 258 569 IPR036640 GO:0005524|GO:0016021
Amo19g0482 1457 SUPERFAMILY ABC transporter transmembrane region 268 575 IPR036640 GO:0005524|GO:0016021
Amo19g0482 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 818 IPR003439 GO:0005524
Amo19g0482 1457 Pfam ABC transporter 1227 1375 IPR003439 GO:0005524
Amo19g0482 1457 CDD ABCC_MRP_domain1 595 795 - -
Amo19g0482 1457 CDD ABC_6TM_ABCC_D2 892 1185 IPR044726 GO:0140359
Amo19g0482 1457 SMART AAA_5 1236 1429 IPR003593 -
Amo19g0482 1457 SMART AAA_5 622 795 IPR003593 -
Amo19g0482 1457 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 62 1446 - -
Amo19g0482 1457 Gene3D - 1193 1444 IPR027417 -
Amo19g0482 1457 Gene3D ABC transporter type 1, transmembrane domain 859 1191 IPR036640 GO:0005524|GO:0016021
Amo19g0482 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 900 1173 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0482 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1212 1444 IPR003439 GO:0005524
Amo19g0482 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1202 1443 IPR027417 -
Amo19g0482 1457 CDD ABC_6TM_ABCC_D1 281 569 IPR044746 GO:0140359
Amo19g0482 1457 CDD ABCC_MRP_domain2 1208 1428 - -
Amo19g0482 1457 SUPERFAMILY ABC transporter transmembrane region 894 1190 IPR036640 GO:0005524|GO:0016021
Amo19g0482 1457 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 62 1446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0482 Amo-Chr19 6926258 6932445 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0482 610 841 Calmodulin-binding Proteins AT2G36910 26.744 3.29e-21 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0482 - - gmx:100813711 2172.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0482 19 6926258 6932445 Amo09g0221 09 2489299 2496158 hybridization