LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo19g0451	ATGGACGAGGACCAAGAGATGGAGATGTTCCAAACGGACAACGATTTCGAAGAAGGCCAGTGGATTGGCGGCGAATTCTACTACAAAAAGCGCAAAGAGAAGCCTATTCAGACTAGAGATGATGTCCTCTACGGTGTTTTTGCCGGCTCCGACGATGAGGACGACGCCGATTATTCCAGCAAGAAACGCAGGAAGGACCTTTCCAAGAAACAGGACCTCACCAAGCGGGTGAATTTTATTTCTACTGGAACTTTTATGCCGAATCAAGATGTTGTTGATAACAATAGAAATTCTAAAGAACATGGGGAAAAAGATGGTTATGTTAGTGAGAATAGGCCAGGTTTAGGTCTTGGAATGAGATCTGCTCCCACTTCAGATGCTGGTTTAGGATTCACTAGTAGTAATGGTGATAGGAATAATGGTTCTGATGAGAATATTGATGATGGTGATGATCATAATTTTTTGCCTACGGCTTTTGGGAAGAAGATTAAGGAAGGGGCGATGCGGAGGGAGAGGGAAAGGGAGAGGGAGAAATTGGAGAAGAAGAGGGGTCAGCGTCAGAGTTCGGATCAAGATGGMTTTGGTAATGCGGGGAAATTCTATAACAATGGAATAGGGATGAAGCTGTTGGAAAAGATGGGTTATAGAGGGGGCGGTCTTGGAAAGAATGAGCAAGGTATTGTGGCTCCTATCGAGGTGAAAATGAGGGCTAAGAATTCAGGTATTGGTTTTAGTGATGCAAGGGAGGRGCCGCCACCARRGTTGCCTGTTTTGCAGCAACAGAACAAAAGCACGGTGGYAGCAGTGCAGCCTGCGGCTAGCAGAACAAAGGAGAGGCTGTGGTCAAAGCAGTCACGGTTGAAGAAGAAGAAAGAGGAGGAAGTGTATGTTACTGCTGAGGAGTTGTTGGCAAGCAAGCAAGAACAGAATTTGGAGGTTGTTCAGAAGGTTTATGATATGAGGGGGCCACAAGTTCGGGTTTATACAAATTTATCTGATTTAAATGCTGAGGAGAAAGCAAAGGAGGAGGAAGTCCCAATGCCGGAACTTCAGCATAACGTTGGGTTGATTGTTCGGTTGGCTGAGGCTGACATTCAAGAGATTGATAGAGATTTGAGGAGAGAAAGGGAGACAGCTCTCAGCTTGAAAAAAGAAAAAGAGAAGTTAGAATCTGAAGCAGCATTCCAAAAGCGTCAACTGGATAATATGGAGGAAATAATGAGTGTCTTGGACCAAGTAGCTGAAGAGAGCACTTCTGGAACACTAACATTAGATTTCCTTGCTAGATGCTTCAGTGACTTGCATAAGAGATATGCCGATAGCTACAAGGTGTGTAATTTGTCCTGCATTGCTTGCTCATATGCTCTTCCTTTGTTTATTAGAATGGTCCAAGATTGGGATCCACGGTATCCTGAGCCAATGCTACGATTTCTTGATTTGTGGGAGAAGTTGCTTCCTCCTTCGGTCCTCACTGCCATATTGGAGAATATAGTCTTACCAAAATTGTCAGCTGCTGTAGATACTTGGGAACCACATCTAGAGACCATTCCTATCCACACTTGGGTGCATCCATGGCTACCAAGGATAGAGCACAAGTTGGAAGGTATTTACCAGGTCATTCGTTCTAAATTGAGTTCTGTTCTTGGTGCCTGGCATCCAAGTGACGCCTCTGCATATACCATATTGTCTCCGTGGAAGACTGTCTTTGATGCTGTAAGTTGGGAACAACTTATGCTTCGATTTATTGTGCCTAAGTTGCAACTTGTCTTGCAGGAGTTTGAAGTCAATCCAGCAAGTCAGAAGCTCGATCAATTTTTTTGGGTAATTAAATGGGCTTCTGTGATTCCAATTCATATCATGGTGGACATGATGGAGAAGTTCTTCTTCACAAAGTGGCTTCAGGTTTTGTATCAGTGGTTGTGCTCAAATCCTAACTTTGAAGAAGTTATGAAGTGGTATAATGGATGGAAGGAGCTTATTCCAGAAGAACTATTGGCAAATGAAAGTATCCGATTCCAGATTAACCGTGGTTTAGATATGATGAGTCAGGCTGTTGACGGAATGGAGGTTTTCCAACCTGGTTTGAAGGAGAATATCAGCTATCTTCGGGTACGTGAGCAACGACAATTTGAGGCTCAGCAGAAAGCAGTAGTAACCTATGCTCAACAGCAAGCTGCTGCAGCATTGGGTGGTGCCAACGCAGATGGTGTGCATGATTTGAGCTTGAAAGAAGTCATTGAGGCTCATGCCCAGCATCATGGTTTGTTGTTCAATATTAAGCCTGGTAGAATGCACAACGGTCACCAAATATATGGATTTGGTAATGTCAGCATAATAATAGACTCGCTACATCAGAAGGTATATGCTCAACATGAGGAAACATGGTCCTTGGAATCTCTTCAAGGATTGCTAGAGTTGCATAATAAATCCCTTGGTAAAAGACACTAA	2448	0.435	MDEDQEMEMFQTDNDFEEGQWIGGEFYYKKRKEKPIQTRDDVLYGVFAGSDDEDDADYSSKKRRKDLSKKQDLTKRVNFISTGTFMPNQDVVDNNRNSKEHGEKDGYVSENRPGLGLGMRSAPTSDAGLGFTSSNGDRNNGSDENIDDGDDHNFLPTAFGKKIKEGAMRREREREREKLEKKRGQRQSSDQDGFGNAGKFYNNGIGMKLLEKMGYRGGGLGKNEQGIVAPIEVKMRAKNSGIGFSDAREXPPPXLPVLQQQNKSTVXAVQPAASRTKERLWSKQSRLKKKKEEEVYVTAEELLASKQEQNLEVVQKVYDMRGPQVRVYTNLSDLNAEEKAKEEEVPMPELQHNVGLIVRLAEADIQEIDRDLRRERETALSLKKEKEKLESEAAFQKRQLDNMEEIMSVLDQVAEESTSGTLTLDFLARCFSDLHKRYADSYKVCNLSCIACSYALPLFIRMVQDWDPRYPEPMLRFLDLWEKLLPPSVLTAILENIVLPKLSAAVDTWEPHLETIPIHTWVHPWLPRIEHKLEGIYQVIRSKLSSVLGAWHPSDASAYTILSPWKTVFDAVSWEQLMLRFIVPKLQLVLQEFEVNPASQKLDQFFWVIKWASVIPIHIMVDMMEKFFFTKWLQVLYQWLCSNPNFEEVMKWYNGWKELIPEELLANESIRFQINRGLDMMSQAVDGMEVFQPGLKENISYLRVREQRQFEAQQKAVVTYAQQQAAAALGGANADGVHDLSLKEVIEAHAQHHGLLFNIKPGRMHNGHQIYGFGNVSIIIDSLHQKVYAQHEETWSLESLQGLLELHNKSLGKRH*	816

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo19g0451	815	MobiDBLite	consensus disorder prediction	54	71	-	-
	Amo19g0451	815	PIRSF	TFIP11	460	810	IPR024933	-
	Amo19g0451	815	PIRSF	TFIP11	1	470	IPR024933	-
	Amo19g0451	815	Pfam	Tuftelin interacting protein N terminal	4	103	IPR022159	-
	Amo19g0451	815	Pfam	G-patch domain	203	243	IPR000467	GO:0003676
	Amo19g0451	815	MobiDBLite	consensus disorder prediction	141	188	-	-
	Amo19g0451	815	PANTHER	TUFTELIN-INTERACTING PROTEIN 11	462	801	-	-
	Amo19g0451	815	PANTHER	TUFTELIN-INTERACTING PROTEIN 11	9	468	-	-
	Amo19g0451	815	MobiDBLite	consensus disorder prediction	86	198	-	-
	Amo19g0451	815	Coils	Coil	358	406	-	-
	Amo19g0451	815	Coils	Coil	289	309	-	-
	Amo19g0451	815	PANTHER	TUFTELIN-INTERACTING PROTEIN 11-RELATED	462	801	IPR045211	GO:0000390
	Amo19g0451	815	PANTHER	TUFTELIN-INTERACTING PROTEIN 11-RELATED	9	468	IPR045211	GO:0000390
	Amo19g0451	815	MobiDBLite	consensus disorder prediction	126	140	-	-
	Amo19g0451	815	MobiDBLite	consensus disorder prediction	94	108	-	-
	Amo19g0451	815	Pfam	GC-rich sequence DNA-binding factor-like protein	464	636	IPR022783	-
	Amo19g0451	815	MobiDBLite	consensus disorder prediction	45	71	-	-
	Amo19g0451	815	SMART	G-patch_5	200	245	IPR000467	GO:0003676
	Amo19g0451	815	ProSiteProfiles	G-patch domain profile.	202	247	IPR000467	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo19g0451	Amo-Chr19	6236469	6238916	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo19g0451	199	243	C2H2 Transcription Factor Family	AT5G26610	46.667	4.11e-07	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo19g0451	K13103		-	gmx:100783256	1146.72