Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0397 ATGTTCCATTTGTTCTTCCTACCTATTCCAAGGTTCTCCACAACAAAACACACACAAATTGTATCAGAATTCAGATTTTTGGTCTTCAATGGCAGCAGCTCAAGATTTGATCAAGTAGTAGCTGGATCTAGAACTGCAAAAAGGTGTTTCATTTCATTCAACTCTATTATGGATGGTCTCAATTGGGATGATGCAACTTCACAAATTATTGCAAGAAATAACACACCAATCTTATGGAGCAAACAACAACAAAGTCAAGAAATAATTCTTACATACCCAAATTCAGAACATTTGATTAATTATCAGCAGCAAGATGCAGCAACAGTAGTGAAATCTTCAGCCATAATGTCACTATCAGAAAATGGACCTTACAACATGGATAATTATTACCAGATAAGTGGTAAGTACATGACAGATTTCAACATGGCCCAACAGCACCAACAACATGATCATCATCATCATCATTGCTTGATTTCATCAGCTACAAATAGCAACACTAATGATGATGATAATGATGGGATTTCAAAGATCTTGTTATCTGATGATGATTGCAAAAACTACTTGTGGAACTTGAGTAGTTCCACTACTGATGCTGCTTCCTCTGCTGAATCTGAAAGTAACAACAATAATAATAATGATGCTTCTATGCTTCCATGCTCTCATCAAAACTCCTCAGATCATCAACAATACATCAACCAAGGAGGACAATTCAATCCTATTATTATCACTAATAAGGATCACTCACCAATTATCAAGATAGAGAATCCACCAAGATCCAAGAAACCCAGATGGGAAAAGACTCCATTTTCATCAACAATAAGTTTCCAAAACCCAAATGAAGCATCAGCAACAATGTCATCAACTTCAACCACTGAAGAAGAAGCTGATCCAGAGGCTATAGCACAAATGAAGGAAATGATATACAGAGCAGCAGCATTCAGGCCAGTGAACTTGTTAGACTCAGATGAAGTGATTGAGAAGCCAAAGAGGAAGAATGTGAGGGTTTCAAGTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGAGAGAAAATAAGCCAAAAAATCAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAAATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTATCTTAAGTTTTTAAGGTCACAGGTTAAGGCACTTGAAAATTTAGGGAACAACACTACTAAAGTTGAAGCAATGGATTATAATAATTATAATAGTTTTGTATTCTCTTTCAACCCTTCCTTCCATTCTCAAATTCATTTTTGA 1281 0.3646 MFHLFFLPIPRFSTTKHTQIVSEFRFLVFNGSSSRFDQVVAGSRTAKRCFISFNSIMDGLNWDDATSQIIARNNTPILWSKQQQSQEIILTYPNSEHLINYQQQDAATVVKSSAIMSLSENGPYNMDNYYQISGKYMTDFNMAQQHQQHDHHHHHCLISSATNSNTNDDDNDGISKILLSDDDCKNYLWNLSSSTTDAASSAESESNNNNNNDASMLPCSHQNSSDHQQYINQGGQFNPIIITNKDHSPIIKIENPPRSKKPRWEKTPFSSTISFQNPNEASATMSSTSTTEEEADPEAIAQMKEMIYRAAAFRPVNLLDSDEVIEKPKRKNVRVSSDPQTVAARQRREKISQKIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNNTTKVEAMDYNNYNSFVFSFNPSFHSQIHF* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0397 426 SMART finulus 341 390 IPR011598 GO:0046983
Amo19g0397 426 MobiDBLite consensus disorder prediction 266 295 - -
Amo19g0397 426 MobiDBLite consensus disorder prediction 199 231 - -
Amo19g0397 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 393 IPR036638 GO:0046983
Amo19g0397 426 MobiDBLite consensus disorder prediction 250 296 - -
Amo19g0397 426 Coils Coil 374 394 - -
Amo19g0397 426 PANTHER TRANSCRIPTION FACTOR BHLH87 57 425 - -
Amo19g0397 426 MobiDBLite consensus disorder prediction 144 168 - -
Amo19g0397 426 MobiDBLite consensus disorder prediction 251 265 - -
Amo19g0397 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Amo19g0397 426 CDD bHLH_AtIND_like 336 394 - -
Amo19g0397 426 Pfam Helix-loop-helix DNA-binding domain 345 384 IPR011598 GO:0046983
Amo19g0397 426 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 57 425 IPR045843 GO:0003700|GO:0006355
Amo19g0397 426 Gene3D - 340 405 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0397 Amo-Chr19 5240453 5242743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0397 132 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 43.827 6.52e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g0397 HLH 5.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0397 - - aip:107616571 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0397 19 5240453 5242743 Amo19g0397 19 5240453 5242743 ECH
Amo19g0397 19 5240453 5242743 Amo19g0397 19 5240453 5242743 PCT