Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0394 ATGGCTGCAACACGCATAGCTTCCTCCTTATTTTCTTCTTCAATCAACGCTACTGTCAAAAATTGCTTCGCTTCAAAAACCATAATAGACCCTCCTCTCATAGCAATATCCTCAAATCGCAAATTATCATCGCTGACCCAATGCTATTACTTTGTGGAACCTTTGTCATTAATTGGTGTTACTAAGTTATGGACGCCTAGAACTTCAGCAGCTGTTGTTGTTTCACAAGAAGAAATTGCTTTATCTGATGATACTGGCTTAGTTGAAGAGGAAAAAGAAAGGCAAGTGTTGGAAGAACAGCAACAAGATGATTCTGCTGAGTCCTCTGTTAACACTAAGCTTTACTTTGGAAATTTGCCGTACAGTGTTGATAGTGCACAACTTGCGGGGTTAATTGAGAGTTATGGAAGTGCAGAACTAATTGAGGTTCTCTATGACAGGGACACTGGAAAAAGCAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGATTGCAATGCAGTAATAGAAAATCTTGACGGAAAAGAATTCTTGGGACGAACTTTACGGGTAAACTTCGCTGACAAACCAAAACCAAAAGAACCATTGTACCCTGAAACTGAGCATAAGCTATTTGTTGGAAATCTATCATGGTCAGTAACTTCTGAGAGCCTTACAGAAGCGTTTCAAGAATATGGAACCGTGGTTGGAGCTAGGGTCTTATATGATGGCGAAACAGGAAGGTCACGCGGCTATGGCTTCGTTTGCTATTCGACAAAGGCAGAAATGGAAGCTGCCCTTGCATCTCTGAATGATGTGGAACTAGAGGGACGGGCAATGCGTGTAAGCGTGGCGCAAGGTAAGCGTTCGCAAGGTTAA 861 0.4204 MAATRIASSLFSSSINATVKNCFASKTIIDPPLIAISSNRKLSSLTQCYYFVEPLSLIGVTKLWTPRTSAAVVVSQEEIALSDDTGLVEEEKERQVLEEQQQDDSAESSVNTKLYFGNLPYSVDSAQLAGLIESYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFADKPKPKEPLYPETEHKLFVGNLSWSVTSESLTEAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALASLNDVELEGRAMRVSVAQGKRSQG* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0394 286 Coils Coil 87 107 - -
Amo19g0394 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Amo19g0394 286 SUPERFAMILY RNA-binding domain, RBD 98 195 IPR035979 GO:0003676
Amo19g0394 286 SUPERFAMILY RNA-binding domain, RBD 196 283 IPR035979 GO:0003676
Amo19g0394 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 274 IPR000504 GO:0003723
Amo19g0394 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Amo19g0394 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Amo19g0394 286 Gene3D - 74 193 IPR012677 -
Amo19g0394 286 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 87 284 - -
Amo19g0394 286 CDD RRM_HP0827_like 113 188 - -
Amo19g0394 286 PANTHER TRANSFORMER-2-RELATED 87 284 - -
Amo19g0394 286 SMART rrm1_1 204 277 IPR000504 GO:0003723
Amo19g0394 286 SMART rrm1_1 113 186 IPR000504 GO:0003723
Amo19g0394 286 Gene3D - 194 286 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0394 Amo-Chr19 5207640 5210254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0394 80 282 Eukaryotic Initiation Factors Gene Family AT4G34110 29.412 9.85e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0394 - - adu:107464158 508.449