Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0390 GTGGTGCAAAAACCAAATTTACGTACGTCAACTTCATGCAACCGGCAAACAAATGATAAAAGTTTGAAAGAGTATAATGCAGTTGTTAAAGTGCTAGCATCAATTGCAGGGATATTGATGCTTTTAGTGATTGCAGAAGCAGTTATAATCTTTCGCCAAAGAAAGCGATATGCTGCTGCTAGGAACATTATTCTTGGGAAGCGTGGTAGTTCAATTAAGGGGTCAGGATTGGAATCGAAGCAACGACAATACTCATTTAATGAGATTGTTAAGATGACCAACAACTTTGATAGGATTCTTGGCAGAGGTGGATTCGGAACAGTTTACCACGGCTTTATTGAGGACATTCACGTGGCTGTCAAGATGCTTTCCCTATCATCAGTTAAGCTTCTAATGAGAGTACATCACCGAAATCTGACTTCTCTTATTGGTTACTGCAATGAAGAAACTAATATAGGACTCATCTATGAATACATGGCAAATGGAAACTTAGACGAACATCTTTCGAGAAAAAACAACAGGGAAAAGTCCTTGAATTGGGAAGATAGACTTCGAATAGCATTGGATGCAGCCCAAGGATTGGAATATCTGCATAATGGTTGTAAGCCACCCATAGTCCACAGAGATGTAAAATGCACAAATATTCTATTAGATGAAAACTTGCATGCCAAACTTGCTGATTTTGGATTATCCAAATGCTTTGCTGCTGACGGGGATACACATGTATCAACAATTGCTGCCGGAACTCCAGGCTACCTTGATCTTGAATATACGACATCAAACAGGTTGACAGAAAAAAGTGATGTGTATAGTTTTGGAGTAGTTCTTTTAAGGATAATCACAGGTCAATCGGTTATAATAGTAAGGGAAGATACAGCTTATCATATAAGTCAGCGGGTTAACTCTATGGTTGCTGAAGGGGATATAACAAAAGTTGTTGATTCAAGGATACAAGGAGATTTTGACAGAAACTCTGCATGGAGAGCGGTTGAAATAGCAATGGCCTCTTTGTCTGTCACTTCGGCGGAAAGACCATACATGAGAGATATAGTGACACACTTGAAGGACTGTTTGGCTGCAGAGTTAGCCCGTAAACATAATTTTTGTGACCTTCAAAATGAAGATTCAGTTGAACAGTTCAGTGTGAATTTAATTAGTACTGATATGACTCCATCAGCTAGATAG 1185 0.3899 VVQKPNLRTSTSCNRQTNDKSLKEYNAVVKVLASIAGILMLLVIAEAVIIFRQRKRYAAARNIILGKRGSSIKGSGLESKQRQYSFNEIVKMTNNFDRILGRGGFGTVYHGFIEDIHVAVKMLSLSSVKLLMRVHHRNLTSLIGYCNEETNIGLIYEYMANGNLDEHLSRKNNREKSLNWEDRLRIALDAAQGLEYLHNGCKPPIVHRDVKCTNILLDENLHAKLADFGLSKCFAADGDTHVSTIAAGTPGYLDLEYTTSNRLTEKSDVYSFGVVLLRIITGQSVIIVREDTAYHISQRVNSMVAEGDITKVVDSRIQGDFDRNSAWRAVEIAMASLSVTSAERPYMRDIVTHLKDCLAAELARKHNFCDLQNEDSVEQFSVNLISTDMTPSAR* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0390 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Amo19g0390 394 ProSiteProfiles Protein kinase domain profile. 94 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g0390 394 PANTHER OS07G0107800 PROTEIN-RELATED 3 394 - -
Amo19g0390 394 Gene3D Transferase(Phosphotransferase) domain 1 159 379 - -
Amo19g0390 394 ProSitePatterns Protein kinases ATP-binding region signature. 100 121 IPR017441 GO:0005524
Amo19g0390 394 SMART serkin_6 94 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g0390 394 Gene3D Phosphorylase Kinase; domain 1 76 158 - -
Amo19g0390 394 SUPERFAMILY Protein kinase-like (PK-like) 78 354 IPR011009 -
Amo19g0390 394 Pfam Protein tyrosine and serine/threonine kinase 96 354 IPR001245 GO:0004672|GO:0006468
Amo19g0390 394 PANTHER PUTATIVE-RELATED 3 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0390 Amo-Chr19 5108189 5109968 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0390 27 394 Receptor kinase-like Gene Family AT1G51880 50.394 1.27e-121 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo19g0390 PK_Tyr_Ser-Thr 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0390 - - aip:107614771 683.715