Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0362 ATGAGCAATGAGATCGCACAGATGCCTCCCCCTTCCACTCTCGGTTGCAGGTTCAATGCTATGCTCAAGCAGCGCGACGACGAGCTCAGGGCCACCGCCGGTCACGTGCCGCCTCCGTCTACGGAAGAAATCGTTCAGCTGTACGAGATGCTGCTGTCGGAGCTCACGTGCAATCAGAAGCTCATTATCACCGATCTCACCTTGATCGCTGTACACCAGAGGGAGCATGCCAGGGGCATCGCCGACGCTATCTGCGCTCGGATTCTCAAGGTGCCTGCAGAGCAAAAGCTTCCTTCAATCTATCTCTTGGACAGTATAGTGAAGAACTTTGGAGAGGAATATGGACAGGAATATGTTAGATACTTTGCATTACGCCTGCCCGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTCATTTGCACCCTGCTATGCGCCATCTCTTTGGCACCTGGTCAGAAGTCTTTCCACCGTCTGCCCTACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAGCTTAATGATGCTAGGTATGGACAAAATCCAAATCTATGTGAATCCGGTTCTTGTGACCAACAGAAAAAGGATGAAAGCAACGAAAACAAGTATATGGTCTTTCATGCAGGTACCAAGTATCWAATAGGCTAA 648 0.4969 MSNEIAQMPPPSTLGCRFNAMLKQRDDELRATAGHVPPPSTEEIVQLYEMLLSELTCNQKLIITDLTLIAVHQREHARGIADAICARILKVPAEQKLPSIYLLDSIVKNFGEEYGQEYVRYFALRLPEVFCEAYRQVQPHLHPAMRHLFGTWSEVFPPSALRKIEAELQLSQLNDARYGQNPNLCESGSCDQQKKDESNENKYMVFHAGTKYXIG* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0362 215 Pfam CID domain 57 162 IPR006569 -
Amo19g0362 215 SMART 558neu5 43 169 IPR006569 -
Amo19g0362 215 ProSiteProfiles CID domain profile. 40 172 IPR006569 -
Amo19g0362 215 CDD CID_Pcf11 45 168 - -
Amo19g0362 215 Gene3D - 37 170 IPR008942 -
Amo19g0362 215 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 180 - -
Amo19g0362 215 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 180 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo19g0362 215 SUPERFAMILY ENTH/VHS domain 39 168 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0362 Amo-Chr19 4802341 4804884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0362 17 171 C2H2 Transcription Factor Family AT4G04885 67.097 2.97e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0362 K14400 - ahf:112776805 350.132