Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0340 ATGATGGATGATAGTAGAAGAAGGAGAAGAAGCAGCCACAACAAGTTTTCAGAGGAAAAGGAACTAGAACTAAGACTTGGTCCACCTGGTGAAGAAGAAGAAGAAGATGAAGAAAAAGATGAAGATTATTGGTCTCATCACAATGAAAACAAGAGAGAAAGAAACAGTGATGAATCAGATCAATCACCACTCTCTCTTGGTTACTTCTCATCCCAGAGAATTTACAACTACCACCAGGACCAGGCTACTAAGGCTAAAGCTTCATCATTTCTTCAGAACATGTCAATGGTGGGAAAGGAATCAAAGGATGCAATATCATCATCACAACCATGTCGTTCTGAAGTGATAGAGTTTCATAATGGTGCAGTCTGTGCAGAGAAGAAAGCATTATCATCACCTTCTTCTGCAAATACAGCTGCCCCCAACAGCTCTCAGAAAAGAAGTGCAGCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTCAGGAAGAACAATGCAAGTGGAAGCACTTTTTCTAAGCCCCCTCTTGGGTCCCACCACAACCATCATCATCATCTTAATCTTAATGTGGAAGACAAGGCTGCTAATAATACTACTAATAAGGAACATGTTAACAACATTAGTGGTCCTCCTAATAAAGGCATGTTTGTGAAGATCAATATGGATGGAATTCCAATTGGGAGAAAAGTGGATATTAATGCTTATGGCAGCTATGACAAACTTTCCTCTGTTGTTGACCACCTCTTTAGAGACCTCCTTTCAGCTCAAAGAAGAGATTCCTGTGGTGGTGGAAGTATTAAAAAGCAAAAGCAAGAGGAAGAGAAAACAATGATAACAACGGGTGTATTAGATGGAAGTGGGGAATATACTCTTATTTATGAAGATAATGAAGGAGACAAGATGCTTCTTGGGGATGTCCCATGGCACATGTTTGTATCAACAGTGAAGAGATTGCGAGTGTTGAAGAAATCTGATCTTGCAGCTCTTTCACTTGGTGGTAAGCAAGGCCACATACACCACTCAAAATGA 1032 0.407 MMDDSRRRRRSSHNKFSEEKELELRLGPPGEEEEEDEEKDEDYWSHHNENKRERNSDESDQSPLSLGYFSSQRIYNYHQDQATKAKASSFLQNMSMVGKESKDAISSSQPCRSEVIEFHNGAVCAEKKALSSPSSANTAAPNSSQKRSAAGPVVGWPPIRSFRKNNASGSTFSKPPLGSHHNHHHHLNLNVEDKAANNTTNKEHVNNISGPPNKGMFVKINMDGIPIGRKVDINAYGSYDKLSSVVDHLFRDLLSAQRRDSCGGGSIKKQKQEEEKTMITTGVLDGSGEYTLIYEDNEGDKMLLGDVPWHMFVSTVKRLRVLKKSDLAALSLGGKQGHIHHSK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0340 343 MobiDBLite consensus disorder prediction 41 59 - -
Amo19g0340 343 MobiDBLite consensus disorder prediction 163 177 - -
Amo19g0340 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 8 337 - -
Amo19g0340 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 337 IPR003311 GO:0005634|GO:0006355
Amo19g0340 343 SUPERFAMILY CAD & PB1 domains 209 321 - -
Amo19g0340 343 MobiDBLite consensus disorder prediction 129 184 - -
Amo19g0340 343 Gene3D - 211 335 - -
Amo19g0340 343 MobiDBLite consensus disorder prediction 1 27 - -
Amo19g0340 343 MobiDBLite consensus disorder prediction 130 149 - -
Amo19g0340 343 ProSiteProfiles PB1 domain profile. 215 324 IPR000270 GO:0005515
Amo19g0340 343 Pfam AUX/IAA family 21 330 IPR033389 -
Amo19g0340 343 MobiDBLite consensus disorder prediction 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0340 Amo-Chr19 4386048 4392304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0340 219 335 B3 DNA Binding Superfamily AT4G23980 29.060 5.73e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo19g0340 AUX_IAA 4.7e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0340 K14484 - tcc:18596026 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0340 19 4386048 4392304 Amo19g0340 19 4386048 4392304 ECH
Amo19g0340 19 4386048 4392304 Amo09g0344 09 3939363 3945914 hybridization
Amo19g0340 19 4386048 4392304 Amo19g0340 19 4386048 4392304 PCT
Amo19g0340 19 4386048 4392304 Amo09g0344 09 3939363 3945914 PCT
Amo09g0344 09 3939363 3945914 Amo19g0340 19 4386048 4392304 PCT