Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0339 ATGGTTCTTGTACGGATACCCCATTTGAGGTTCTTTCTGTTTCTGCTTCTTCATATTCACTGCATCAGCTGCTACAACACCACAACAACACCATTGGGCTGTACGGACACAGGCCGTGTCTGCACCTCTTTCTTGGCCTTTAAGCCTCAGAACCAAAGCTTAGCTGTGATTCAAAGCATGTTTGATGTGTTACCCGGTGACATCACTGTTGAGGATAGTGGTTGGGACTATGTGTTCATAAGGAAGAACTGTTCTTGTGCCTATGGCCTCAGGAAGTATGTGTCTAACACCACTTTTACTGTGAAATCCAATCAAGGGTATGTGTATGATTTGGTTATGGATGCTTATGATGGTCTTGCTTTGCCTCCAAACACAACAAGGAGGGCTAAGAATGGTGCTGTTGTGTCTTTGAGGTTGTTCTGTGGCTGCTCTAGTGGCTTGTGGAACTATCTGATGAGTTATGTTATGAGAGATGGTGACAGTGTTGAATCATTGGCAAGTAGATTTGGGGTTAGTATGGATAACATTGAGAGTGTGAATGGCATTGGTAATCCTGATAATGTCACGGTTGGTTCGGTTTATTATATACCTCTTGATTCAGCTCCAGGTGATCCCTATCCCATTAACAATACTGCTCCTCCAGCTCCTGTTCCCGCCCCATCTGTTGAGAATATCTCAGGTGATCAAGTCGGTCGTAAGGCTCATGTACCTTACGGATGGATCATTGGGGGTTCAGGGGTTGGTCTTTTTATGGTGTTATTAGGCATAGTTCTCTGTGTTTCTCTGAAGTCATCAAATTGTCGCTCTGAAGCCAGAAGTAATGAAAAAGATGCTGAGGGGAAGATATCTCATAAGTTCCATATTCTTAGAAATCCAAGTTTTTTCTGTGGTTCTGGGAGGTATATATGTGGCAAAACTGTAGAACAGAAGCAAACTGATGCCGAATCCAGTAATCACACGATTACCGTTCCCAAAGTTTCAACTCTTGGCCCTGATGTGTTTGACATGGATAAGCCTGTAGTTTTTACATATGAAGAGATTTTCGCCACAACTGACTGTTTCTCTGATTCAAATCTACTTGGTCATGGTACCTATGGTTCTGTTTACTATAGCCTTCTTCGGGATCAGGAAGTTGCTATCAAAAGAATGACTGCTATGAAAACAAAAGAATTCATGTCAGAGATGAAAGTTCTATGCAAGGTCCATCATGCTAATCTGGTAGAATTGATCGGCTATGCAGCTAGTCAGGATGAGCTTTTCCTTGTTTATGAATATGCTCAAAAGGGTTCACTTAGAAGTCATTTGCATGATCCTCAAAATAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTCCAAATTGCTCTTGATGCCGCTCGGGGACTTGAATATATACATGAACACACTAAGACTCATTATGTCCACCGGGACATCAAGACGAGCAACATTTTGCTCGATGCTTCCTTTAGAGCAAAGATTTCGGATTTCGGGTTAGCAAAACTTGTTGGAAAAACAAATGATGGTGAAGTTTCAACAACCAAAGTTGTTGGTACTTATGGATATCTTGCACCAGAATACTTGAGTGATGGCCTTGCAACAACAAAGAGTGATGTCTATGCATTTGGTGTTGTCCTTTTCGAGATCATATCGGGGAGGGAGGCCATTATTCGAACAGAAGGAACGATGTCCAAAAATCCGGATAGGCGTTCATTGGCGTCTGTGATGTTGGCAGTCCTTAGGAACTCGCCGGATTCCGTGAGCATGTCAAACATGAGAGATTATATTGACCCAAATATGATGGATCTGTATCCCCATGATTGTGTATTTAAGATGGCCATGCTGGCGAAGCAATGCGTGGATGACGATCCGGTCTTACGGCCGGACATGAAACAAGTTGTGATATCTCTCTCACAGATTCTTCTTTCTTCAATTGAATGGGAAGCAACTCTGGCAGGGAATAGCCAAGTATTTAGTGGCCTTGTTCAGGGAAGATAG 1995 0.4281 MVLVRIPHLRFFLFLLLHIHCISCYNTTTTPLGCTDTGRVCTSFLAFKPQNQSLAVIQSMFDVLPGDITVEDSGWDYVFIRKNCSCAYGLRKYVSNTTFTVKSNQGYVYDLVMDAYDGLALPPNTTRRAKNGAVVSLRLFCGCSSGLWNYLMSYVMRDGDSVESLASRFGVSMDNIESVNGIGNPDNVTVGSVYYIPLDSAPGDPYPINNTAPPAPVPAPSVENISGDQVGRKAHVPYGWIIGGSGVGLFMVLLGIVLCVSLKSSNCRSEARSNEKDAEGKISHKFHILRNPSFFCGSGRYICGKTVEQKQTDAESSNHTITVPKVSTLGPDVFDMDKPVVFTYEEIFATTDCFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTAMKTKEFMSEMKVLCKVHHANLVELIGYAASQDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTNDGEVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGREAIIRTEGTMSKNPDRRSLASVMLAVLRNSPDSVSMSNMRDYIDPNMMDLYPHDCVFKMAMLAKQCVDDDPVLRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0339 664 ProSiteProfiles Protein kinase domain profile. 354 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g0339 664 Gene3D Transferase(Phosphotransferase) domain 1 427 650 - -
Amo19g0339 664 SMART LysM_2 153 197 IPR018392 -
Amo19g0339 664 Pfam Protein tyrosine and serine/threonine kinase 358 634 IPR001245 GO:0004672|GO:0006468
Amo19g0339 664 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 664 IPR044812 GO:0019199|GO:0045087
Amo19g0339 664 Gene3D Phosphorylase Kinase; domain 1 330 425 - -
Amo19g0339 664 PANTHER BNAA06G02020D PROTEIN 33 664 - -
Amo19g0339 664 CDD LysM 153 196 IPR018392 -
Amo19g0339 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Amo19g0339 664 ProSitePatterns Protein kinases ATP-binding region signature. 360 387 IPR017441 GO:0005524
Amo19g0339 664 SUPERFAMILY Protein kinase-like (PK-like) 332 636 IPR011009 -
Amo19g0339 664 SUPERFAMILY LysM domain 152 197 IPR036779 -
Amo19g0339 664 Gene3D LysM domain 149 204 IPR036779 -
Amo19g0339 664 ProSiteProfiles LysM domain profile. 152 196 IPR018392 -
Amo19g0339 664 Pfam LysM domain 154 193 IPR018392 -
Amo19g0339 664 SMART serkin_6 354 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0339 Amo-Chr19 4359316 4365167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0339 31 664 Receptor kinase-like Gene Family AT1G51940 69.673 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo19g0339 PK_Tyr_Ser-Thr 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0339 - - gmx:100796989 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0339 19 4359316 4365167 Amo19g0339 19 4359316 4365167 ECH
Amo19g0339 19 4359316 4365167 Amo09g0346 09 3958040 3964018 hybridization
Amo19g0339 19 4359316 4365167 Amo19g0339 19 4359316 4365167 PCT
Amo19g0339 19 4359316 4365167 Amo09g0346 09 3958040 3964018 PCT
Amo09g0346 09 3958040 3964018 Amo19g0339 19 4359316 4365167 PCT