Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo19g0339 | ATGGTTCTTGTACGGATACCCCATTTGAGGTTCTTTCTGTTTCTGCTTCTTCATATTCACTGCATCAGCTGCTACAACACCACAACAACACCATTGGGCTGTACGGACACAGGCCGTGTCTGCACCTCTTTCTTGGCCTTTAAGCCTCAGAACCAAAGCTTAGCTGTGATTCAAAGCATGTTTGATGTGTTACCCGGTGACATCACTGTTGAGGATAGTGGTTGGGACTATGTGTTCATAAGGAAGAACTGTTCTTGTGCCTATGGCCTCAGGAAGTATGTGTCTAACACCACTTTTACTGTGAAATCCAATCAAGGGTATGTGTATGATTTGGTTATGGATGCTTATGATGGTCTTGCTTTGCCTCCAAACACAACAAGGAGGGCTAAGAATGGTGCTGTTGTGTCTTTGAGGTTGTTCTGTGGCTGCTCTAGTGGCTTGTGGAACTATCTGATGAGTTATGTTATGAGAGATGGTGACAGTGTTGAATCATTGGCAAGTAGATTTGGGGTTAGTATGGATAACATTGAGAGTGTGAATGGCATTGGTAATCCTGATAATGTCACGGTTGGTTCGGTTTATTATATACCTCTTGATTCAGCTCCAGGTGATCCCTATCCCATTAACAATACTGCTCCTCCAGCTCCTGTTCCCGCCCCATCTGTTGAGAATATCTCAGGTGATCAAGTCGGTCGTAAGGCTCATGTACCTTACGGATGGATCATTGGGGGTTCAGGGGTTGGTCTTTTTATGGTGTTATTAGGCATAGTTCTCTGTGTTTCTCTGAAGTCATCAAATTGTCGCTCTGAAGCCAGAAGTAATGAAAAAGATGCTGAGGGGAAGATATCTCATAAGTTCCATATTCTTAGAAATCCAAGTTTTTTCTGTGGTTCTGGGAGGTATATATGTGGCAAAACTGTAGAACAGAAGCAAACTGATGCCGAATCCAGTAATCACACGATTACCGTTCCCAAAGTTTCAACTCTTGGCCCTGATGTGTTTGACATGGATAAGCCTGTAGTTTTTACATATGAAGAGATTTTCGCCACAACTGACTGTTTCTCTGATTCAAATCTACTTGGTCATGGTACCTATGGTTCTGTTTACTATAGCCTTCTTCGGGATCAGGAAGTTGCTATCAAAAGAATGACTGCTATGAAAACAAAAGAATTCATGTCAGAGATGAAAGTTCTATGCAAGGTCCATCATGCTAATCTGGTAGAATTGATCGGCTATGCAGCTAGTCAGGATGAGCTTTTCCTTGTTTATGAATATGCTCAAAAGGGTTCACTTAGAAGTCATTTGCATGATCCTCAAAATAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTCCAAATTGCTCTTGATGCCGCTCGGGGACTTGAATATATACATGAACACACTAAGACTCATTATGTCCACCGGGACATCAAGACGAGCAACATTTTGCTCGATGCTTCCTTTAGAGCAAAGATTTCGGATTTCGGGTTAGCAAAACTTGTTGGAAAAACAAATGATGGTGAAGTTTCAACAACCAAAGTTGTTGGTACTTATGGATATCTTGCACCAGAATACTTGAGTGATGGCCTTGCAACAACAAAGAGTGATGTCTATGCATTTGGTGTTGTCCTTTTCGAGATCATATCGGGGAGGGAGGCCATTATTCGAACAGAAGGAACGATGTCCAAAAATCCGGATAGGCGTTCATTGGCGTCTGTGATGTTGGCAGTCCTTAGGAACTCGCCGGATTCCGTGAGCATGTCAAACATGAGAGATTATATTGACCCAAATATGATGGATCTGTATCCCCATGATTGTGTATTTAAGATGGCCATGCTGGCGAAGCAATGCGTGGATGACGATCCGGTCTTACGGCCGGACATGAAACAAGTTGTGATATCTCTCTCACAGATTCTTCTTTCTTCAATTGAATGGGAAGCAACTCTGGCAGGGAATAGCCAAGTATTTAGTGGCCTTGTTCAGGGAAGATAG | 1995 | 0.4281 | MVLVRIPHLRFFLFLLLHIHCISCYNTTTTPLGCTDTGRVCTSFLAFKPQNQSLAVIQSMFDVLPGDITVEDSGWDYVFIRKNCSCAYGLRKYVSNTTFTVKSNQGYVYDLVMDAYDGLALPPNTTRRAKNGAVVSLRLFCGCSSGLWNYLMSYVMRDGDSVESLASRFGVSMDNIESVNGIGNPDNVTVGSVYYIPLDSAPGDPYPINNTAPPAPVPAPSVENISGDQVGRKAHVPYGWIIGGSGVGLFMVLLGIVLCVSLKSSNCRSEARSNEKDAEGKISHKFHILRNPSFFCGSGRYICGKTVEQKQTDAESSNHTITVPKVSTLGPDVFDMDKPVVFTYEEIFATTDCFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTAMKTKEFMSEMKVLCKVHHANLVELIGYAASQDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTNDGEVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGREAIIRTEGTMSKNPDRRSLASVMLAVLRNSPDSVSMSNMRDYIDPNMMDLYPHDCVFKMAMLAKQCVDDDPVLRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR* | 665 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo19g0339 | 664 | ProSiteProfiles | Protein kinase domain profile. | 354 | 641 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Amo19g0339 | 664 | Gene3D | Transferase(Phosphotransferase) domain 1 | 427 | 650 | - | - | |
Amo19g0339 | 664 | SMART | LysM_2 | 153 | 197 | IPR018392 | - | |
Amo19g0339 | 664 | Pfam | Protein tyrosine and serine/threonine kinase | 358 | 634 | IPR001245 | GO:0004672|GO:0006468 | |
Amo19g0339 | 664 | PANTHER | CHITIN ELICITOR RECEPTOR KINASE 1-RELATED | 33 | 664 | IPR044812 | GO:0019199|GO:0045087 | |
Amo19g0339 | 664 | Gene3D | Phosphorylase Kinase; domain 1 | 330 | 425 | - | - | |
Amo19g0339 | 664 | PANTHER | BNAA06G02020D PROTEIN | 33 | 664 | - | - | |
Amo19g0339 | 664 | CDD | LysM | 153 | 196 | IPR018392 | - | |
Amo19g0339 | 664 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 473 | 485 | IPR008271 | GO:0004672|GO:0006468 | |
Amo19g0339 | 664 | ProSitePatterns | Protein kinases ATP-binding region signature. | 360 | 387 | IPR017441 | GO:0005524 | |
Amo19g0339 | 664 | SUPERFAMILY | Protein kinase-like (PK-like) | 332 | 636 | IPR011009 | - | |
Amo19g0339 | 664 | SUPERFAMILY | LysM domain | 152 | 197 | IPR036779 | - | |
Amo19g0339 | 664 | Gene3D | LysM domain | 149 | 204 | IPR036779 | - | |
Amo19g0339 | 664 | ProSiteProfiles | LysM domain profile. | 152 | 196 | IPR018392 | - | |
Amo19g0339 | 664 | Pfam | LysM domain | 154 | 193 | IPR018392 | - | |
Amo19g0339 | 664 | SMART | serkin_6 | 354 | 641 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo19g0339 | Amo-Chr19 | 4359316 | 4365167 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo19g0339 | 31 | 664 | Receptor kinase-like Gene Family | AT1G51940 | 69.673 | 0.0 | 863 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LysM | Amo19g0339 | PK_Tyr_Ser-Thr | 2.4e-50 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo19g0339 | - | - | gmx:100796989 | 1129.39 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo19g0339 | 19 | 4359316 | 4365167 | Amo19g0339 | 19 | 4359316 | 4365167 | ECH | |
Amo19g0339 | 19 | 4359316 | 4365167 | Amo09g0346 | 09 | 3958040 | 3964018 | hybridization | |
Amo19g0339 | 19 | 4359316 | 4365167 | Amo19g0339 | 19 | 4359316 | 4365167 | PCT | |
Amo19g0339 | 19 | 4359316 | 4365167 | Amo09g0346 | 09 | 3958040 | 3964018 | PCT | |
Amo09g0346 | 09 | 3958040 | 3964018 | Amo19g0339 | 19 | 4359316 | 4365167 | PCT |