Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0338 ATGCATGGATATGCAATATTTAAACAGAATGCATTCCACATAATGGCAGCTGGTAGCATAATGTTTGTCTTCTTATTTCAGGACACAATGTATGATACCAGAGTGGAGGAAGATGCTGAGTCATCCGATTGGGAAGGTAGGGGGGCTTCAATGTTGCCCGTTTTTTTGGGTTTGGATGGGTTGCGAGCTGAAGATGTTCTTGAAATGGAGTTCTCTTCACCTCAGGAGGCTAGCGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCAAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGCGGTACACGTTTGTTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGCTGTAACCCGATGTGGATGTTTGGCGGAGATGAGGATAAAGAGGAAAGAGGGTAGTGGGAGGTGGTATGTGTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGAGAGATTGGGATTAGCATACCTAAGATTTATGAGTCCTTCGCAGCACAACTAGGGGGTTTTAACCTGGTAACATTCACAAAGCAAGATATGTGTGTGGATTTTCTGCGTGACACCGAGGATGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACGGAGTTCGTTGAGCTGGAAAAGTCTGGATGGACTATGTTCACCCGCGAAATGTTTCTCAGATACCGGGATAGCCTGAAACGGTGTGTTCGTGTTAGAATATGTGAATTTGATGACAGTGACAACCCTCATGCATATACTCTTCAGAAGTATCGGAGGCCTGAGATGAATTGGAAGGTTTATAGGGACCATATCTCGAACAGATTTACTTGCAGCTGCATGCGTATGGAGTCGTTTGGCATTCCTTGTGTGCATATCCTTTCCGTTTGTGTAAGGCTAGACTTGGTGGAAATCCCTGAAAGCCTGGTGCTGCGTAGGTGGTCTAAGGCAGCCAAATTGGAGATACATAACCAATGTGGTGAGCAACACACTGCTGAACCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTGTGTAAGCGTTTAGGGCGCGTTGCTTGCATGAGCGATGAAGACTTCAAGCTTTACTCAAACAAGCTTATGAGCGATGCTCTGTTCCTTGAAATAAAGTACGGCTTAAGACCATTAACGGATAATATGACAACAGCAAATGATTGCGGGGTGAAGGACCCCATTCGTGTCAGGACAAAAGGCACGGCTCGGATGAGTCAAGCAGGCGGTTCTGCGCCGAAAACGAAAAGAAAGTGCAGCACATGCGGGAAGCTCGGGCACCGGAGGACTAGATGCCCCAACGGAGGCGCGCAACCTTCAACGAGGAACAAAGAATCACTTGCTGGGAGAAATAAACGCAAGCGAACGAAGGTTACCACCTAA 1530 0.4693 MHGYAIFKQNAFHIMAAGSIMFVFLFQDTMYDTRVEEDAESSDWEGRGASMLPVFLGLDGLRAEDVLEMEFSSPQEASGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFVCNRQGFREKKWLEKVDRKREHKAVTRCGCLAEMRIKRKEGSGRWYVSRFVEEHNHELAYGKLVDYLRSHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMCVDFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWTMFTREMFLRYRDSLKRCVRVRICEFDDSDNPHAYTLQKYRRPEMNWKVYRDHISNRFTCSCMRMESFGIPCVHILSVCVRLDLVEIPESLVLRRWSKAAKLEIHNQCGEQHTAEPSVTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSNKLMSDALFLEIKYGLRPLTDNMTTANDCGVKDPIRVRTKGTARMSQAGGSAPKTKRKCSTCGKLGHRRTRCPNGGAQPSTRNKESLAGRNKRKRTKVTT* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0338 509 ProSiteProfiles Zinc finger CCHC-type profile. 466 483 IPR001878 GO:0003676|GO:0008270
Amo19g0338 509 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 49 186 - -
Amo19g0338 509 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 232 364 - -
Amo19g0338 509 Pfam FAR1 DNA-binding domain 80 169 IPR004330 -
Amo19g0338 509 SUPERFAMILY Retrovirus zinc finger-like domains 447 485 IPR036875 GO:0003676|GO:0008270
Amo19g0338 509 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 49 186 IPR031052 GO:0006355
Amo19g0338 509 ProSiteProfiles Zinc finger SWIM-type profile. 310 343 IPR007527 GO:0008270
Amo19g0338 509 MobiDBLite consensus disorder prediction 449 509 - -
Amo19g0338 509 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 232 364 IPR031052 GO:0006355
Amo19g0338 509 SMART 26again6 318 345 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0338 Amo-Chr19 4351472 4353778 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g0338 FAR1 1.6e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0338 - - adu:107487706 574.318