Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0291 ATGACACTAACAACTTCATCATCTTCTTCTTCTTCTTCTTCAGAAACATCTACTACCAGCACCATTTCACCACCACCCTCACCCTCACCCTCCTCATCTTCTTCTTCTTCCAAGAAGCAAAAAACAGAGCATGCCAACAAGGACCCCAAGAGACCAAGAGACTGCAGCAAGCACCCCCTCTACCATGGCGTCCGCAAGCGCAATTGGGGCAAATGGGTCTCCGAAATCCGCGAGCCTCGCAAGAAATCCAGGATTTGGCTTGGAACTTTCGCCACGCCCGAGATGGCTGCCAGAGCACACGACGTCGCCGCCTTGTGCATCAAAGGCCAGTCCGCCATCCTCAATTTCCCCGAACTCGCCGGGACACTCCCTCGTCCAGTCACGTGTTCCCCACGTGACATTCAAGCTGCGGCCACATCCGCAGCCTCCATGGTCAAATTTGACTCTATTGCTGCTGCCGAACAGCCTCAGCTCCACCCAGACACGTCTGATGATGCTGAGACTTGCTCGCAGCAGCAAGAGGCAGAACAATCGCCGTCGTCGGAATCGTCATCATTGTCAATGTCTAGAGAGACGGATTCGTCTGAACTGAGCGAGATAGTTGAGCTTCCGAACATTGAAGATGATGAAGGGTTTGACTCGGTTGAGTCATCAAGGAGCGAGTTCATTTGGTTCGACATGGTCGATAACTGCAATGGTTGGGTGTATGATCCTCCAATGGGGTTAGAGGGTGCTGAATTCTGTGCAAATTTCATTGCTGATAGTAACTCTTTGATACCCATTTGGGATGATTGA 795 0.5132 MTLTTSSSSSSSSSETSTTSTISPPPSPSPSSSSSSSKKQKTEHANKDPKRPRDCSKHPLYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALCIKGQSAILNFPELAGTLPRPVTCSPRDIQAAATSAASMVKFDSIAAAEQPQLHPDTSDDAETCSQQQEAEQSPSSESSSLSMSRETDSSELSEIVELPNIEDDEGFDSVESSRSEFIWFDMVDNCNGWVYDPPMGLEGAEFCANFIADSNSLIPIWDD* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0291 264 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Amo19g0291 264 MobiDBLite consensus disorder prediction 40 61 - -
Amo19g0291 264 MobiDBLite consensus disorder prediction 162 194 - -
Amo19g0291 264 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Amo19g0291 264 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Amo19g0291 264 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Amo19g0291 264 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Amo19g0291 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 239 - -
Amo19g0291 264 CDD AP2 59 119 IPR001471 GO:0003700|GO:0006355
Amo19g0291 264 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 239 - -
Amo19g0291 264 MobiDBLite consensus disorder prediction 156 213 - -
Amo19g0291 264 MobiDBLite consensus disorder prediction 1 22 - -
Amo19g0291 264 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Amo19g0291 264 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Amo19g0291 264 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0291 Amo-Chr19 3431214 3432166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0291 31 241 AP2-EREBP Transcription Factor Family AT5G11590 53.081 1.09e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo19g0291 AP2 6.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0291 K09286 - aip:107616595 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0291 19 3431214 3432166 Amo19g0291 19 3431214 3432166 ECH