Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0282 ATGGAAGTGCCGGAATACTTCGTCGGTGGCTATTATGGCACCGGAGGAGACCAATTCTCAACGGAGAAGCGGCACGGCGTCGGCGGTGGTGACCAGAAGCACGGTGGCTATGGCGGCGGTGGTGAGCCGTTTGCCATTGACGACCTACTTGATTTCTCCAACGCCGACGCCATCATGTCCGACGGATTCTTTGAAAATGTCGCCGGAAACTCCTCCACCGACTCGTCCAACGTCACCGCGGTTGACAGCTGTAACTCCTCCGTCTCCGGTGGCGACAACCATTTCCCTGCCGGCATTGTCCCTCGRGCATTCTCCTCCGGCGATCCACAATTCTCCGGCGGTGAWCTCTGCGTTCCGTGGCTCTCYAACTTCGTGGAGGACTCGTTCTCCACCGAAGAAGATCTGAAAACGCTGCAGCTTCTCTCCGGCGGTGGCGCCYCTGCCATCAACGGCAGAAAACCTCAGACGCCGGAGTCATCATCTTCCTCGGAAAACGCGCTCCATCCTCCATTTGARACCGCGCGAAACGCACCGTTTCTTCTTCATCAGGAGACGCCGCTTCCAGGCAAAGCTCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGATTGGTCCACGCGCTTGCTTCACCTCTCGACTCCTCCGCCGCCGAAACTCCAGACGTCTGCGYRGGAGCATAAGCCTCCGACACCGAAAGTGGCGGCACCGACGARGACGAAGAGGAGGGAGGCGAATGCGGAGTGTTTGGGGAGAAAGTGTCTACACTGCGGCGCAGATAAGACGCCACAGTGGCGAACAGGGCCCATGGGCCCAAAGACTCTGTGCAACGCTTGCGGTGTGAGGTTTAAGTCGGGCCGACTTGTGCCTGAGTACAGGCCCGCGGCGAGCCCAACYTTCGTTTCAACGAAGCACTCGAATTCTCATAGGAAGGTTCTGGAACTGAGGKGGCAGAAGGATWTGCAGCGGCAGCAWCAGCAGCAGCAGCAACTGATGAGTCAAACTTCCATTTTTGGTGTATCCAACGGTGGAGATGAGTTCTTAATCCATCATCATCATCATCATCCCCATCATCATCAACAACACCATTGTGGCCCTGATTTTAGGCATGTTATCTAG 1113 0.5678 MEVPEYFVGGYYGTGGDQFSTEKRHGVGGGDQKHGGYGGGGEPFAIDDLLDFSNADAIMSDGFFENVAGNSSTDSSNVTAVDSCNSSVSGGDNHFPAGIVPRAFSSGDPQFSGGXLCVPWLSNFVEDSFSTEEDLKTLQLLSGGGAXAINGRKPQTPESSSSSENALHPPFETARNAPFLLHQETPLPGKARSKRSRAAPGDWSTRLLHLSTPPPPKLQTSAXEHKPPTPKVAAPTXTKRREANAECLGRKCLHCGADKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRXQKDXQRQXQQQQQLMSQTSIFGVSNGGDEFLIHHHHHHPHHHQQHHCGPDFRHVI* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0282 370 PANTHER GATA TRANSCRIPTION FACTOR 9 1 370 - -
Amo19g0282 370 ProSiteProfiles GATA-type zinc finger domain profile. 246 282 IPR000679 GO:0006355|GO:0043565
Amo19g0282 370 MobiDBLite consensus disorder prediction 19 40 - -
Amo19g0282 370 PANTHER GATA TRANSCRIPTION FACTOR 1 370 - -
Amo19g0282 370 ProSitePatterns GATA-type zinc finger domain. 252 277 IPR000679 GO:0006355|GO:0043565
Amo19g0282 370 MobiDBLite consensus disorder prediction 341 364 - -
Amo19g0282 370 Gene3D - 248 332 IPR013088 GO:0006355|GO:0008270
Amo19g0282 370 MobiDBLite consensus disorder prediction 145 234 - -
Amo19g0282 370 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 249 309 - -
Amo19g0282 370 Pfam GATA zinc finger 252 285 IPR000679 GO:0006355|GO:0043565
Amo19g0282 370 CDD ZnF_GATA 251 298 IPR000679 GO:0006355|GO:0043565
Amo19g0282 370 SMART GATA_3 246 296 IPR000679 GO:0006355|GO:0043565
Amo19g0282 370 MobiDBLite consensus disorder prediction 153 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0282 Amo-Chr19 3313696 3315110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0282 37 370 C2C2-Gata Transcription Factor Family AT4G32890 40.708 1.86e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo19g0282 GATA 2.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0282 - - aip:107619293 688.723