Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo19g0266 | ATGAAGAAACATAAGTCCTCTGTTCTCAACTTCCGTAAACCAACCGCACAGTCACTTGAAGCTCCAAAGGAGCCTCGACGACCGAAAACTCATTGGGACCATGTATTAGAAGAGATGGTGTGGTTGTCAAAGGACTTTGAATCAGAGAGGAAATGGAAACTTGCTCAGGCCAAGAAAGTTGCTTTGAGAGCCAGCAAAGGCATGTTAGATCAGGCTACCAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAACGCTTACGGAAAGTTGCGCTAAATATTTCTAAGGATGTTAAGAAGTTCTGGACAAAAATAGAAAAGCTGGTTCTTTATAAGCATCAAATGGAGCTTGACGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGGTACTCGTCAATGCTGGCAAAGAATCTTGTGGATCCTTATAAACCGGTTGAGAAAAGTTCTGCTGAGCATCACATGAGTAGTCAATACAAGGATATAGATACAGACATTATCAATGAACCCGAGGAAGCTGATGTTGAGCATCAGTTGGATGCACCTGATGATGATGAAGAATATGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAGGATGAGGCCCATATAACCAAAGAAGAAAGACAAGAGGAATTGGCAGCTTTGAATGATGAAATTGATCTTCCAATTGAGGAGTTACTCAAGCGTTATGGTGGCAGGAATGATGAATCTGCAAGTCAAGAAAGTAGTCCAGAGCATAGTGAAGATGGTGATAAAATAGCTAGAAGTAGTGATGAAAATGGAGATGCTTTATGCGCCAATGAAACTGGTACAGGCGACTCTGGCATGGACCCTGGTCGACGCTGTGGAGAAAGTGTTGGTGACGTAGCTACTCCAGTAAACAATGGTGATGTTGCTATTCCGATAAACAATCAATCTGAAAATATTAAGGAGGTTTCTAGTGAGATGGCTAATGAAGATACTACCCATGGCTTTACTGATGAAGAGGATGATGGTGACTTCTTGCAAACAACAGAGGACAAGGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAGTAGATATCATTGATCCCAATGATGAGATTGCATTATTGCAAAAGGAGAGTGACATGCCTATTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGACATGGGGATGAATCTGATTATGCTTCTCCTTTATCTGAGCACCATGAGGACTCTTCAAGCAATGAAGATTCTGGACAGAAGGATGTTGCTGTCCCTATGGAAGAAGATATCAAGTCTGAGAACCTTCCTGCTGTTCAACCTCAGGAAAAAGAATGGGAAGTACCTCATGAAACTTCAGAAAAAGGAGAAGGCGAGTATAATATATCTGACGCAGCTGCTGCAGCAAGATCAGCTCAACCAACTGGAATCACCTTCTCTACAACTAAAGTGCGTACAAAGTTCCCTTTTCTACTGAAGTACTCTCTTCGCGAGTACCAACACATTGGATTAGATTGGCTTGTCACAATGTATGAAAAGAGACTGAATGGAATTTTGGCCGATGAAATGGGGCTTGGCAAAACAATTATGACTATAGCTTTGCTTGCTCATCTTGCTTGTGAAAAGGGAATATGGGGTCCACATCTAATCGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTCAAAATTTTAACTTACTTTGGGAGTGCAAAGGAGCGGAAACATAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTGTGCATAACAACCTATAGATTAGTCATTCAGGATTCCAAAGTTTTTAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAGAGATGGCAAACACTCTTGAATTTCAACTCAAAACGGCGTATTCTCTTGACTGGCACACCACTGCAGAATGATCTCATGGAGCTGTGGTCTCTCATGCATTTTTTGATGCCACATGTCTTCCAATCTCATCAAGAGTTTAAGGATTGGTTTTGCAATCCTATATCTGGGATGGTAGAGGGAGAGGAGAAAGTTAACAAGGAGGTTGTTGATCGCCTGCATAATGTTCTTCGTCCATTCTTACTCCGCCGGTTGAAGCGAGATGTGGAAAAGCAACTTCCATCGAAACATGAGCATGTCATATACTGTAGACTGTCAAAGCGGCAGCGTAATTTATATGAAGACTTCATTGCTAGTTCAGAGACCCAAGCTACTCTTGCAAGTGCCAACTTTTTTGGGATGATTAGTATTATAATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCCTTTGACATGTCGGGTATTGATGTTCAATTAAGTTCTTCTATTTGCTCCATGCTTTTTCCTAATCCCTTTTCAATAGTAGACCTAAAAGGCTTAGGCCTCCTATTTACTCATCTTGAATATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAAGCCATTGAGACCCCTTCTAGTTTAATCATGGAACGCACTGATAAGGGTGACCTGGAGGTAATTAAGCCTTGGTCAAAATGTCGAAAAAAGCTACAAGGAACAAACATTTTTGAAGAGATCCGCAAAGCAATTTGGGAAGAGAGGTTGAAAGAGGCGAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAGAAAACCCATCTACTCCACAAGCCTAAGGAATCTTGTTACTCTAAAGCATCCTGTATATGATATTCATCAAGTTAAGGAAAACCCTGTTTCATATTTGTACTCATCAAAGCTGGCCGACATTGTTCTATCACCAGTCGAACGATTTCAGAGGATGACTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCAGCAGCACGAGCACCCTCTCCAGTTTGCTGGTGCAGCAGAAGTGGGGCAACTGTGTTTCTGCATCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTCACCATTACTGTCACCAATCAGGCCTGCAGTTGTTCGTAGGCAAGTGTATTTCCCAGATAGGCGTCTGATACAATTTGACTGCGGGAAATTGCAAGAACTCGCAATATTGTTGAGGAAATTAAAATCAGAAGGTCACCGTGCTCTGATATTTACCCAGATGACAAAGATGCTTGATGTGCTGGAAGCATTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACTCAACCAGAAGAGAGGCAGACCTTAATGCAGCGCTTTAACACTAACCCCAAATATTTTCTTTTTATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAACCTAGTTGGAGCTGACACTGTTATTTTTTACGATAGTGACTGGAATCCAGCTATGGATCAACAGGCTCAGGATCGTTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTACAGATTGATTAGTGAAAGCACCATTGAGGAAAATATCTTAAAGAAAGCAAATCAGAAGCGTGCTCTTGACAATCTTGTAATTCAAAGTGGGGGTTATAACACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTCAGATTAAAAATATGCTGGAGAAATCCCAGAACAATGGGGAAGTGTCTGTAACTAATGCAGACCTAGAGGCTGCATTAAAATGTGTGGAAGATGAAGCAGATTATAATGCATTAAAGAAAGTTGAGGAGGAAGATGCTGTTGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTATGGAAATGAAGATGATATGAAGGATGATGAGCCTGCTGAGTTTGGTGAATCTGTGTCCAACTTAAGTAAACAGAATGCAGTAATGTCAAATGGAGATCCCAAGGAAGATGCAATGGCCACTGTTTCTTTAAAAGAAGACGACGTTGACATGTTGGCCGATGTAAAACAGATGGCTGCAGCTGGGCAAGCTATCTCTGCCTTTGAGAATAAGTTGCGTCCTATAGATCGTTATGCCATTCGTTTTCTGGAGCTTTGGGATCCAGTTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAAATGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTAGAGACCTTGGCTCAACATCAGTTGATGGAGGAACTAGAATATGAAGCTAAACAGAAAGCGGAAGCTGAGGAAGAAAATTCTAAAAAGACTCCTGGTGATTCAAAGCCCAAACCGAAAAAGAAACCCAAGAAAGCAAAGTTTAAATCTCTGAAGAAAGGATCTCTAAACTCTGGCACGAGACCTGTAAAAGAAGAGCCACAGGCAGAGCCAATGACTATAGATGATGATGTTGTCAGTAGTCTTGCTCTTGTATCCCCAAATTCAGCTATGCAGAAAAAACGGAAGAAACCTAAATTTACAAGTGATGGTGAGGAAGAAAAGAGATCAAAGAAGTCAAAAAAATCCAAGAGGGATCTTCCTGATGTTTTTGCTTCAGATTTAGATTCCAACTTATTAGTTATGCATGATGAAAATGCAGAGACTCTGGTTGAGAATGAACAGAAAACGTCAAGCAGAAATAAGATGGGAGGGAAAATATCCATCACTCCAATGCCAGTGAAATGGATCTTGATGATAAAACCAGAAAAAGTGAAAAAGGGAAATCTTTGGTCCAAAGATTGTATCCCACCAGCAGATACTTGGTTACCTCAGGAAGATGCAGTATTATGTGCAGTTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACGCTTTATGGCATGACTGCTGGTGGGGCATATCGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTTAGAGAACTATTCCAGAAATATGTCTTATACTCGGTGGATGCCACAAATAATGAGAAGACAAACAATGCTGGTTCTGGAAAAGCCCTTCTTAAAGTTACAGAGGAGAACATTCGCATGTTGTTAGATGTTGCTTCTGTGCAACCCAATAGGGAATTACTACTGCAGAAGCATTTTTATGCACTGCTTTCTTGTATCTGGAAGCTTTCATCACATGCTGACCGAAGGCAAAATCCATCAGCTACCTCTAATGGTCTCTGTTTTGATAAGAGTTTCTTTAGTTCTGTTGGCCAGCATTCACAGAATTCCTTGAAAAAATCCTCTGAAAGGATGACATTCAGTAATTCGGCCCAGTGCAAGAAGTTAGTAGCTTCTGCACTTGATGACACCAGAGGTAGGCAAGAGAGTGACCAAACCTTACTCTCTAACTGCAGTGAAGACAAAACCATGCAAGTGAGTACAGATCAGATGGATATAACACTGGAGTTCCAGAAAGAGGAGAGTGATGCCTTGCCTTCATTTCCATCTGTTATAAATTTATCAATACAAGATACAGAACTGTTGCCATCTGTAAATAAGCAAACAGGAGAAGATGGTCACTTTAGAGTCTTTACTTCTATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGCATGTAAGGAAGACAGTTCAGCATGGGCTTCGTCAGCATTTCCAACAAATGATACAAGATCCAAACCTGGGTCCAGGATACAATCATTGGGAAAGCAGAAGTTTTCTAACACTGACACTGCTAAGCCTTCTAAGTCAAAGTCTAAAAGAGCCTTCACTGATCCTAGTGAGACAAATCACCAACAGACTGATCCTTCATTCCTCTCAATGCCATCACTTAAAGATCTGAGATTTGATCTCAATGCAGCATCCACTATGGATGACATTGTAGTTGATGATTTGCCTAGTAGCAGTCTGCCCTTTGTCCTCGACGTGGAAAATTCATTTGATGAAACGGAGAGTTTTGGAGCAGTCCCGCATGATTATGTAGCTGGTTTAATCTCAGATCTTGATGATTGCACATCATTCCCAGAATTTAACGACATTGGTTAG | 6105 | 0.4126 | MKKHKSSVLNFRKPTAQSLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSSMLAKNLVDPYKPVEKSSAEHHMSSQYKDIDTDIINEPEEADVEHQLDAPDDDEEYDVQSDDESEDDEQTLEEDEAHITKEERQEELAALNDEIDLPIEELLKRYGGRNDESASQESSPEHSEDGDKIARSSDENGDALCANETGTGDSGMDPGRRCGESVGDVATPVNNGDVAIPINNQSENIKEVSSEMANEDTTHGFTDEEDDGDFLQTTEDKDDETTLSEEEKLEKVDIIDPNDEIALLQKESDMPIEELLARYKKDLSDDGHGDESDYASPLSEHHEDSSSNEDSGQKDVAVPMEEDIKSENLPAVQPQEKEWEVPHETSEKGEGEYNISDAAAAARSAQPTGITFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMSGIDVQLSSSICSMLFPNPFSIVDLKGLGLLFTHLEYSMTSWESDEVQAIETPSSLIMERTDKGDLEVIKPWSKCRKKLQGTNIFEEIRKAIWEERLKEAKERAAAIAWWNSLRCKRKPIYSTSLRNLVTLKHPVYDIHQVKENPVSYLYSSKLADIVLSPVERFQRMTDVVESFMFAIPAARAPSPVCWCSRSGATVFLHPSYKQKCSEVLSPLLSPIRPAVVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLQIKNMLEKSQNNGEVSVTNADLEAALKCVEDEADYNALKKVEEEDAVDNQEFTEEAIGRLEEDEYGNEDDMKDDEPAEFGESVSNLSKQNAVMSNGDPKEDAMATVSLKEDDVDMLADVKQMAAAGQAISAFENKLRPIDRYAIRFLELWDPVIDKTALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYEKWDADFATEAYRQQVETLAQHQLMEELEYEAKQKAEAEEENSKKTPGDSKPKPKKKPKKAKFKSLKKGSLNSGTRPVKEEPQAEPMTIDDDVVSSLALVSPNSAMQKKRKKPKFTSDGEEEKRSKKSKKSKRDLPDVFASDLDSNLLVMHDENAETLVENEQKTSSRNKMGGKISITPMPVKWILMIKPEKVKKGNLWSKDCIPPADTWLPQEDAVLCAVVHEYGSNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLYSVDATNNEKTNNAGSGKALLKVTEENIRMLLDVASVQPNRELLLQKHFYALLSCIWKLSSHADRRQNPSATSNGLCFDKSFFSSVGQHSQNSLKKSSERMTFSNSAQCKKLVASALDDTRGRQESDQTLLSNCSEDKTMQVSTDQMDITLEFQKEESDALPSFPSVINLSIQDTELLPSVNKQTGEDGHFRVFTSIAENRFREAARACKEDSSAWASSAFPTNDTRSKPGSRIQSLGKQKFSNTDTAKPSKSKSKRAFTDPSETNHQQTDPSFLSMPSLKDLRFDLNAASTMDDIVVDDLPSSSLPFVLDVENSFDETESFGAVPHDYVAGLISDLDDCTSFPEFNDIG* | 2035 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo19g0266 | 2034 | PANTHER | HELICASE SRCAP | 9 | 1929 | - | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 150 | 369 | - | - | |
| Amo19g0266 | 2034 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 731 | 1219 | IPR027417 | - | |
| Amo19g0266 | 2034 | Coils | Coil | 1437 | 1457 | - | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 1527 | 1552 | - | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 311 | 326 | - | - | |
| Amo19g0266 | 2034 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 457 | 729 | IPR027417 | - | |
| Amo19g0266 | 2034 | Pfam | Helicase conserved C-terminal domain | 1051 | 1161 | IPR001650 | - | |
| Amo19g0266 | 2034 | Coils | Coil | 212 | 232 | - | - | |
| Amo19g0266 | 2034 | Gene3D | - | 753 | 828 | - | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 1448 | 1465 | - | - | |
| Amo19g0266 | 2034 | CDD | DEXQc_SRCAP | 507 | 729 | - | - | |
| Amo19g0266 | 2034 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 519 | 684 | IPR014001 | - | |
| Amo19g0266 | 2034 | Pfam | SNF2-related domain | 524 | 796 | IPR000330 | GO:0005524|GO:0140658 | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 212 | 272 | - | - | |
| Amo19g0266 | 2034 | Pfam | HSA domain | 24 | 90 | IPR014012 | - | |
| Amo19g0266 | 2034 | CDD | SF2_C_SNF | 1037 | 1172 | - | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Amo19g0266 | 2034 | ProSiteProfiles | Myb-like domain profile. | 1626 | 1679 | IPR001005 | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 153 | 182 | - | - | |
| Amo19g0266 | 2034 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1052 | 1202 | IPR001650 | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 401 | 468 | - | - | |
| Amo19g0266 | 2034 | PANTHER | HELICASE SRCAP-RELATED | 9 | 1929 | - | - | |
| Amo19g0266 | 2034 | ProSiteProfiles | HSA domain profile. | 19 | 91 | IPR014012 | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 1897 | 1959 | - | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 401 | 440 | - | - | |
| Amo19g0266 | 2034 | Gene3D | - | 477 | 752 | IPR038718 | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 1466 | 1482 | - | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 1448 | 1552 | - | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 1900 | 1933 | - | - | |
| Amo19g0266 | 2034 | SMART | bromneu2 | 20 | 91 | IPR014012 | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 338 | 361 | - | - | |
| Amo19g0266 | 2034 | Gene3D | - | 1016 | 1267 | IPR027417 | - | |
| Amo19g0266 | 2034 | MobiDBLite | consensus disorder prediction | 183 | 211 | - | - | |
| Amo19g0266 | 2034 | Gene3D | - | 1622 | 1683 | - | - | |
| Amo19g0266 | 2034 | SMART | helicmild6 | 1078 | 1161 | IPR001650 | - | |
| Amo19g0266 | 2034 | SMART | ultradead3 | 503 | 696 | IPR014001 | - | |
| Amo19g0266 | 2034 | Coils | Coil | 1386 | 1406 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo19g0266 | Amo-Chr19 | 3131860 | 3144494 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo19g0266 | 527 | 799 | RAD5 or RAD16-like Gene Family | AT5G43530 | 30.124 | 2.07e-28 | 123 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SNF2 | Amo19g0266 | SNF2_N | 3.7e-70 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo19g0266 | - | - | gmx:100794898 | 3056.16 |