Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0243 GCGGAGCTTGCTTTTTCTGTTTCTGTCTTCGAGGAACTGAGGAAGAAGAAGAAAAAGATGAAGAAACATAAGTCCTCTGTTCTCAACTTCCGTAAACCAACCGCACAGGCACTTGAAGCTCCAAAGGAGCCTCGACGACCGAAAACTCATTGGGACCATGTATTAGAAGAGATGGTGTGGTTGTCAAAGGACTTTGAATCAGAGAGGAAATGGAAACTAGCTCAGGCCAAGAAAGTTGCTTTGAGAGCCAGCAAAGGCATGTTAGATCAGGCTACCAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAACGCTTACGGAAAGTTGCGCTAAATATTTCTAAGGATGTTAAGAAGTTCTGGACAAAAATAGAAAAGCTGGTTCTTTATAAGCACCAAATGGAGCTTGACGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGGTACTCGTCAATGCTGGCAAAGAATCTTGTGGATCCTTATAAACCGGTTGAGAAAAGTTCTGCTGAGCATCACATGAGTAGTCAATACAAGGATATAGATACAGACATTATCAATGAACCCGAGGAAGCTGATGTTGAGCATCAGTTGGATGCACCTGATGATGATGAAGAATATGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAGGATGAGGCCCATATAACCAAAGAAGAAAGACAAGAGGAATTGGCAGCTTTGAATGATGAAATTGATCTTCCAATTGAGGAGTTACTCAAGCGTTATGGTGGCAGGAATGATGAATCTGCAAGTCAAGAAAGTAGTCCAGAGCATAGTGAAGATGGTGATAAAATAGCTAGAAGTAGTGATGAAAATGGAGATGCTTTATGCACCAAGGAAACTGGTACAGGCGACTCTGGCATGGACCCTGGTCGACGCTGTGGAGAAAGTGTTGGTGACGTAGCTACTCCAGTAAACAATGGTGATGTTGCTATTCCGATAAACAATCAATCTGAAAATATTAAGGAGGTTTCTAGTGAGATGGCTAATGAAGATACTACCCATGGCTTTACTGATGAAGAGGATGATGGTGACTTCTTGCAAACAACAGAGGACAAGGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAGTAGATATCATTGATCCCAATGATGAGATTGCATTATTGCAAAAGGAGAGTGACATGCCTATTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGACATGGGGATGAATCTGATTATGCTTCTCCTTTATCTGAGCACCATGAGGACTCTTCAAGCAATGAAGATTCTGGACAGAAGGATGTTGCTGTCCCTATGGAAGAAGATATCAAGTCTGAGAACCTTCCTGCTGTTCAACCTCAGGAAAAAGAATGGGAAGTACCTCATGAAACTTCAGAAAAAGGAGAAGGCGAGTATAATATATCTGACGCAGCTGCTGCAGCAAGATCAGCTCAACCAACTGGAATCACCTTCTCTACAACTAAAGTGCGTACAAAGTTCCCTTTTCTACTGAAGTACTCTCTTCGCGAGTACCAACACATTGGATTAGATTGGCTTGTCACAATGTATGAAAAGAGACTGAATGGAATTTTGGCCGATGAAATGGGGCTTGGCAAAACAATTATGACTATAGCTTTGCTTGCTCATCTTGCTTGTGAAAAGGGAATATGGGGTCCACATCTAATCGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTCAAAATTTTAACTTACTTTGGGAGTGCAAAGGAGCGGAAACATAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTGTGCATAACAACCTATAGATTAGTCATTCAGGATTCCAAAGTTTTTAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAGAGATGGCAAACACTCTTGAATTTCAACTCAAAACGGCGTATTCTCTTGACTGGCACACCATTGCAGAATGATCTCATGGAGCTGTGGTCTCTCATGCATTTTTTGATGCCACATGTCTTCCAATCTCATCAAGAGTTTAAGGATTGGTTTTGCAATCCTATATCTGGGATGGTAGAGGGAGAGGAGAAAGTTAACAAGGAGGTTGTTGATCGCCTGCATAATGTTCTTCGTCCATTCTTACTCCGCCGGTTGAAGCGAGATGTGGAAAAGCAACTTCCATCGAAACATGAGCATGTCATATACTGTAGACTGTCAAAGCGGCAGCGTAATTTATATGAAGACTTCATTGCTAGTTCAGAGACCCAAGCTACTCTTGCAAGTGCCAACTTTTTTGGGATGATTAGTATTATAATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCCTTTGACATGTCGGGTATTGATGTTCAATTAAGTTCTTCTATTTGCTCCATGCTTTTTCCTAATCCCTTTTCAATAGTAGACCTAAAAGGCTTAGGCCTCCTATTTACTCATCTTGAATATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAAGCCATTGAGACCCCTTCTAGTTTAATCATGGAACGCACTGATAAGGGTGACCTGGAGGTAATTAAGCCTTGGTCAAAATGTCGAAAAAAGCTACAAGGAACAAACATTTTTGAAGAGATCCGCAAAGCAATTTGGGAAGAGAGGTTGAAAGAGGCGAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAGAAAACCCATCTACTCCACAAGCCTAAGGAATCTTGTTACTCTAAAGCATCCTGTATATGATATTCATCAAGTTAAGGAAAACCCTGTTTCATATTTGTACTCATCAAAGCTGGCCGACATTGTTCTATCACCAGTCGAACGATTTCAGAGGATGACTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCAGCAGCACGAGCACCCTCTCCAGTTTGCTGGTGCAGCAGAAGTGGGGCAACTGTGTTTCTGCATCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTCACCATTACTGTCACCAATCAGGCCTGCAGTTGTTCGTAGGCAAGTGTATTTCCCAGATAGGCGTCTGATACAATTTGACTGCGGGAAATTGCAAGAACTCGCAATATTGTTGAGGAAATTAAAATCAGAAGGTCACCGTGCTCTGATATTTACCCAGATGACAAAGATGCTTGATGTGCTGGAAGCATTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACTCAACCAGAAGAGAGGCAGACCTTAATGCAGCGCTTTAACACTAACCCCAAATATTTTCTTTTTATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAACCTAGTTGGAGCTGACACTGTTATTTTTTACGATAGTGACTGGAATCCAGCTATGGATCAACAGGCTCAGGATCGTTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTACAGATTGATTAGTGAAAGCACCATTGAGGAAAATATCTTAAAGAAAGCAAATCAGAAGCGTGCTCTTGACAATCTTGTAATTCAAAGTGGGGGTTATAACACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTCAGATTAAAAATATGCTGGAGAAATCCCAGAACAATGGGGAAGTGTCTGTAACTAATGCAGACCTAGAGGCTGCATTAAAATGTGTGGAAGATGAAGCAGATTATAATGCATTAAAGAAAGTTGAGGAGGAAGATGCTGTTGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTATGGAAATGAAGATGATATGAAGGATGATGAGCCTGCTGAGTTTGGTGAATCTGTGTCCAACTTAAGTAAACAGAATGCAGTAATGTCAAATGGAGATCCCAAGGAAGATGCAATGGCCACTGTTTCTTTAAAAGAAGACGACGTTGACATGTTGGCCGATGTAAAACAGATGGCTGCAGCTGGGCAAGCTATCTCTGCCTTTGAGAATAAGTTGCGTCCTATAGATCGTTATGCCATTCGTTTTCTGGAGCTTTGGGATCCAGTTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAAATGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTAGAGACCTTGGCTCAACATCAGTTGATGGAGGAACTAGAATATGAAGCTAAACAGAAAGCGGAAGCTGAGGAAGAAAATTCTAAAAAGACTCCTGGTGATTCAAAGCCCAAACCGAAAAAGAAACCCAAGAAAGCAAAGTTTAAATCTCTGAAGAAAGGATCTCTAAACTCTGGCACGAGACCTGTAAAAGAAGAGCCACAGGCAGAGCCAATGACTATAGATGATGATGTTGTCAGTAGTCTTGCTCTTGTATCCCCAAATTCAGCTATGCAGAAAAAACGGAAGAAACCTAAATTTACAAGTGATGGTGAGGAAGAAAAGAGATCAAAGAAGTCAAAAAAATCCAAGAGGGATCTTCCTGATGTTTTTGCTTCAGATTTAGATTCCAACTTATTAGTTATGCATGATGAAAATGCAGAGACTCTGGTTGAGAATGAACAGAAAACGTCAAGCAGAAATAAGATGGGAGGGAAAATATCCATCACTCCAATGCCAGTGAAATGGATCTTGATGATAAAACCAGAAAAAGTGAAAAAGGGAAATCTTTGGTCCAAAGATTGTATCCCACCAGCAGATACTTGGTTACCTCAGGAAGATGCAGTATTATGTGCAGTTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACGCTTTATGGCATGACTGCTGGTGGGGCATATCGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTTAGAGAACTATTCCAGAAATATGTCTTATACTCGGTGGATGCCACAAATAATGAGAAGACAAACAATGCTGGTTCTGGAAAAGCCCTTCTTAAAGTTACAGAGGAGAACATTCGCATGTTGTTAGATGTTGCTTCTGTGCAACCCAATAGGGAATTACTACTGCAGAAGCACTTTTATGCACTGCTTTCTTGTATCTGGAAGCTTTCATCACATGCTGACCGAAGGCAAAATCCATCAGCTACCTCTAATGGTCTCTGTTTTGATAAGAGTTTCTTTAGTTCTGTTGGCCAGCATTCACAGAATTCCTTGAAGAAATCCTCTGAAAGGATGACATTCAGTAATTCGGCCCAGTGCAAGAAGTTAGTAGCTTCTGCACTTGATGACACCAGAGGTAGGCAAGAGAGTGACCAAACCTTACTCTCTAACTGCAGTGAAGACAAACCCATGCAAGTGAGTACAGATCAGATGGATATAACACTGGAGTTCCAGAAAGAGGAGAGTGATGCCTTGCCTTCATTTCCATCTGTTATAAATTTATCAATACAAGATACAGAACTGTTGCCATCTGTAAATAAGCAAACAGGAGAAGATGGTCACTTTAGAGTCTTTACTTCTATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGCATGTAAGGAAGACAGTTCAGCATGGGCTTCGTCAGCATTTCCAACAAATGATACAAGATCCAAACCTGGGTCCAGGATACAATCATTGGGAAAGCAGAAGTTTTCTAACACTGACACTGCTAAGCCTTCTAAGTCAAAGTCTAAAAGAGCCTTCACTGATCCTAGTGAGACAAATCACCAACAGACTGATCCTTCATTCCTCTCAATGCCATCACTTAAAGATCTGAGATTTGATCTCAATGCAGCATCCACTATGGATGACATTGTAGTTGATGATTTGCCTAGTAGCAGTCTGCCCTTTGTCCTCGACGTGGAAAATTCATTTGATGAAACGGAGAGTTTTGGAGCAGTCCCGCATGATTATGTAGCTGGTTTAATCTCAGATCTTGATGATTGCACATCATTCCCAGAATTTAACGACATTGGTTAG 6162 0.4135 AELAFSVSVFEELRKKKKKMKKHKSSVLNFRKPTAQALEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSSMLAKNLVDPYKPVEKSSAEHHMSSQYKDIDTDIINEPEEADVEHQLDAPDDDEEYDVQSDDESEDDEQTLEEDEAHITKEERQEELAALNDEIDLPIEELLKRYGGRNDESASQESSPEHSEDGDKIARSSDENGDALCTKETGTGDSGMDPGRRCGESVGDVATPVNNGDVAIPINNQSENIKEVSSEMANEDTTHGFTDEEDDGDFLQTTEDKDDETTLSEEEKLEKVDIIDPNDEIALLQKESDMPIEELLARYKKDLSDDGHGDESDYASPLSEHHEDSSSNEDSGQKDVAVPMEEDIKSENLPAVQPQEKEWEVPHETSEKGEGEYNISDAAAAARSAQPTGITFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMSGIDVQLSSSICSMLFPNPFSIVDLKGLGLLFTHLEYSMTSWESDEVQAIETPSSLIMERTDKGDLEVIKPWSKCRKKLQGTNIFEEIRKAIWEERLKEAKERAAAIAWWNSLRCKRKPIYSTSLRNLVTLKHPVYDIHQVKENPVSYLYSSKLADIVLSPVERFQRMTDVVESFMFAIPAARAPSPVCWCSRSGATVFLHPSYKQKCSEVLSPLLSPIRPAVVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLQIKNMLEKSQNNGEVSVTNADLEAALKCVEDEADYNALKKVEEEDAVDNQEFTEEAIGRLEEDEYGNEDDMKDDEPAEFGESVSNLSKQNAVMSNGDPKEDAMATVSLKEDDVDMLADVKQMAAAGQAISAFENKLRPIDRYAIRFLELWDPVIDKTALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYEKWDADFATEAYRQQVETLAQHQLMEELEYEAKQKAEAEEENSKKTPGDSKPKPKKKPKKAKFKSLKKGSLNSGTRPVKEEPQAEPMTIDDDVVSSLALVSPNSAMQKKRKKPKFTSDGEEEKRSKKSKKSKRDLPDVFASDLDSNLLVMHDENAETLVENEQKTSSRNKMGGKISITPMPVKWILMIKPEKVKKGNLWSKDCIPPADTWLPQEDAVLCAVVHEYGSNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLYSVDATNNEKTNNAGSGKALLKVTEENIRMLLDVASVQPNRELLLQKHFYALLSCIWKLSSHADRRQNPSATSNGLCFDKSFFSSVGQHSQNSLKKSSERMTFSNSAQCKKLVASALDDTRGRQESDQTLLSNCSEDKPMQVSTDQMDITLEFQKEESDALPSFPSVINLSIQDTELLPSVNKQTGEDGHFRVFTSIAENRFREAARACKEDSSAWASSAFPTNDTRSKPGSRIQSLGKQKFSNTDTAKPSKSKSKRAFTDPSETNHQQTDPSFLSMPSLKDLRFDLNAASTMDDIVVDDLPSSSLPFVLDVENSFDETESFGAVPHDYVAGLISDLDDCTSFPEFNDIG* 2054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0243 2053 PANTHER HELICASE SRCAP-RELATED 17 1947 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 231 295 - -
Amo19g0243 2053 Gene3D - 1641 1702 - -
Amo19g0243 2053 Pfam Helicase conserved C-terminal domain 1070 1180 IPR001650 -
Amo19g0243 2053 Coils Coil 1405 1425 - -
Amo19g0243 2053 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 538 703 IPR014001 -
Amo19g0243 2053 Coils Coil 231 251 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 169 388 - -
Amo19g0243 2053 Coils Coil 1456 1476 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 1546 1571 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 357 380 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 202 230 - -
Amo19g0243 2053 CDD DEXQc_SRCAP 526 748 - -
Amo19g0243 2053 CDD SF2_C_SNF 1056 1191 - -
Amo19g0243 2053 SMART helicmild6 1097 1180 IPR001650 -
Amo19g0243 2053 SMART ultradead3 522 715 IPR014001 -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 330 345 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 1467 1484 - -
Amo19g0243 2053 Pfam SNF2-related domain 543 815 IPR000330 GO:0005524|GO:0140658
Amo19g0243 2053 Gene3D - 1035 1286 IPR027417 -
Amo19g0243 2053 ProSiteProfiles Myb-like domain profile. 1645 1698 IPR001005 -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 1467 1571 - -
Amo19g0243 2053 PANTHER HELICASE SRCAP 17 1947 - -
Amo19g0243 2053 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1071 1221 IPR001650 -
Amo19g0243 2053 SMART bromneu2 39 110 IPR014012 -
Amo19g0243 2053 Gene3D - 496 771 IPR038718 -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 21 48 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 172 201 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 420 487 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 1916 1978 - -
Amo19g0243 2053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 748 IPR027417 -
Amo19g0243 2053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 750 1238 IPR027417 -
Amo19g0243 2053 Gene3D - 772 847 - -
Amo19g0243 2053 Pfam HSA domain 43 109 IPR014012 -
Amo19g0243 2053 ProSiteProfiles HSA domain profile. 38 110 IPR014012 -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 420 459 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 1485 1501 - -
Amo19g0243 2053 MobiDBLite consensus disorder prediction 1919 1952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0243 Amo-Chr19 2813477 2825210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0243 546 818 RAD5 or RAD16-like Gene Family AT5G43530 31.077 1.94e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo19g0243 SNF2_N 3.7e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0243 - - gmx:100794898 3057.7