Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0241 ATGGAAATGGACATGTCTTCAAACACCAATAAGGACTTGTTCTCCTCTCCAACTCTCTCCCTCACCCTTGCTGGGATTTTTAATAACCAAATAGAGGAAATAGGGGATGAGGGAAGTAGAGAGTGTTCAAGGAAAGAGGACACCACCACCACTGTAAGCAGTGAGAATTCTGGGCCGTTGAGATCAAGATCAGATAATGATGATGATGGTGGTGGTGATGACGATGGGAGCAAGAAGAAGAAAAGAAAGAAGTATCATAGGCACACCGCTGGGCAGATCAGAGAAATGGAAGCGGTTTTCAAAGAATCCCCCCATCCAGATGAAAGCCAAAGGAAACAACTGAGCAAGCAATTAGGCCTTGCTCCAAGTCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAGTTCGTTGTTGAAGAAAGAAATAGAGAAATTAATGGAGGAAAATAAGGCCATGAGAGAGGCCATAAGCAAATCTTGTTGCCCTAACTGTGGCATGGCCATGGCCACCACTTCTACTATCACTGATGATAGCTCCACCATCTCCATTGAAGAACAACAACTTCGTTTAGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTACGAGAAGTTTCAGGGAAATACCCATCAGCTGGAACAATAATGTACCCTTCATGTTCTACTAGCCATGAGCAAGTAGATAATAATAGAATAAACTCATCAATGGATTTTTACAATGGAATTTTTGGGGTTGAAAAATCAAGGATAATGGAGATAGTGAACCAAGCAATAGAGGAACTCATAAAGATGGCTACTATTGGAGAACCTTTATGGGTACGTAGTGTTGAAACTGGTAGAGAAATACTCAACTATGATGAATATGAGAAGGTTTTTGAGGTTCACAATAATTCAAGAATTATTGGAAGAAGGTCAAACACGTCCATTGAAGCATCAAGAGAAAATGGAATTGTTTTTATGGATCTATCAAGTCTTGTCCAAAGTTTTCTAGATGTGAATCAATGGAAGGAGATGTTTCCATGCTTAATATCAAAGGCTGCAAATGTTGATGTTATATGCAATGGAGAAGGATCTAATAGCAATGGTGTTGTTCAACTGATGTTTGCTGAGTTGCAAATGCTGACACCAATGGTGGCAACAAGAGAAGTGTATTTCGTGAGATGCTGCAGAAAGTTAAGTGATGAAAAGTGGGGAATTGTTGATGTTTCCATAGACAAAGTAGAAGACAACATCGATGCTTCCCTTCTTAAATGCAGAAAACGCCCTTCTGGTTGCATTATTGAAGATAAGTCCCATGGTCATTGCAAGGTAAGTTGGGTGGAACACTGGGAATGCGAGAAAAGCAGTGTGCACAGAATGTATAGAAGCATTGTGAATAACGGTACAGCGTTTGGGGCAAGGCACTGGATATCAACACTGCAGCTTCAATGTCAACGCCTTGTTTTCTTCATGGCAACTAATGTTCCCATCAAGGATTCAACTGGTGTTGCCACATCAGCTGGAAGAAAGAGCATATTGAAGTTAGGAGAAAGAATGAGATGGAGTTTTTGCCATGCAATTGGAGCCTCAAGCTTCCATACATGGACAAAGGTGACAAGTAAAAATGGAGAAGACATTAGGATCAGTTCTAGGAAGAACTTGAATGATCCTGGTCAACCTCTTGGTGTCATCCTATCAGCTGTTTCTTCTGTGTGGCTTCCTCTCCCTCCAAATGTTCTTTTTCATTTCTTGAGGGATGAAAATCATAGGTCTCAGTGGGATATCATGGTCACTGGTGGGTCATCGGTGCAGTCCATAGCAACATTAGCCAAAGGCCAAGATCGGGGCAATGCTGTAAATATCCATGAGATTACATCAAAAGAAAACATCAAGTGGTGGATATTACAAGATAGCTCCACAAATGCTTATGAATCAATGGTAGTGTATGCTCCTGTGGACATTCCTAGCATGAAGAATGTGATGAATGGATGTGATTCAACCAACATTCCAATATTACCCTCAGGGTTCTCAATTCTCCCTGATGGGGTTGATTCAAGGCCATTGATTACTACTTCTACTACTATGATGAAGCAACAACAACAAGAAAATATGAATACTGTAGAAGGAGGGTCTTTGTTAACAATGGCATTCCAAGTAATTACTAATAATAATAGTAATGGTTCTCCATCATCAGCAAAATTGACTTTGGAGTCTGTGGAATCAGTCAAGAGTTTAGTTTCTTGTACATTAAGGAATATCAAATCATGTTTACAATGTGAAGAAGATTGA 2298 0.4025 MEMDMSSNTNKDLFSSPTLSLTLAGIFNNQIEEIGDEGSRECSRKEDTTTTVSSENSGPLRSRSDNDDDGGGDDDGSKKKKRKKYHRHTAGQIREMEAVFKESPHPDESQRKQLSKQLGLAPSQVKFWFQNRRTQIKAIQERHESSLLKKEIEKLMEENKAMREAISKSCCPNCGMAMATTSTITDDSSTISIEEQQLRLENAKLKAEVEKLREVSGKYPSAGTIMYPSCSTSHEQVDNNRINSSMDFYNGIFGVEKSRIMEIVNQAIEELIKMATIGEPLWVRSVETGREILNYDEYEKVFEVHNNSRIIGRRSNTSIEASRENGIVFMDLSSLVQSFLDVNQWKEMFPCLISKAANVDVICNGEGSNSNGVVQLMFAELQMLTPMVATREVYFVRCCRKLSDEKWGIVDVSIDKVEDNIDASLLKCRKRPSGCIIEDKSHGHCKVSWVEHWECEKSSVHRMYRSIVNNGTAFGARHWISTLQLQCQRLVFFMATNVPIKDSTGVATSAGRKSILKLGERMRWSFCHAIGASSFHTWTKVTSKNGEDIRISSRKNLNDPGQPLGVILSAVSSVWLPLPPNVLFHFLRDENHRSQWDIMVTGGSSVQSIATLAKGQDRGNAVNIHEITSKENIKWWILQDSSTNAYESMVVYAPVDIPSMKNVMNGCDSTNIPILPSGFSILPDGVDSRPLITTSTTMMKQQQQENMNTVEGGSLLTMAFQVITNNNSNGSPSSAKLTLESVESVKSLVSCTLRNIKSCLQCEED* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0241 765 Coils Coil 193 215 - -
Amo19g0241 765 SUPERFAMILY Bet v1-like 509 687 - -
Amo19g0241 765 ProSiteProfiles START domain profile. 253 492 IPR002913 GO:0008289
Amo19g0241 765 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Amo19g0241 765 Pfam START domain 263 489 IPR002913 GO:0008289
Amo19g0241 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 12 763 IPR042160 -
Amo19g0241 765 Coils Coil 138 168 - -
Amo19g0241 765 SUPERFAMILY Homeodomain-like 67 140 IPR009057 -
Amo19g0241 765 MobiDBLite consensus disorder prediction 32 93 - -
Amo19g0241 765 SMART HOX_1 81 143 IPR001356 GO:0003677
Amo19g0241 765 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Amo19g0241 765 Gene3D - 71 156 - -
Amo19g0241 765 CDD homeodomain 86 137 IPR001356 GO:0003677
Amo19g0241 765 MobiDBLite consensus disorder prediction 61 79 - -
Amo19g0241 765 SMART START_1 262 489 IPR002913 GO:0008289
Amo19g0241 765 SUPERFAMILY Bet v1-like 256 489 - -
Amo19g0241 765 Pfam Homeodomain 82 137 IPR001356 GO:0003677
Amo19g0241 765 Gene3D - 265 489 IPR023393 -
Amo19g0241 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 12 763 - -
Amo19g0241 765 MobiDBLite consensus disorder prediction 34 48 - -
Amo19g0241 765 CDD START_ArGLABRA2_like 257 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0241 Amo-Chr19 2779659 2795811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0241 52 764 Homeobox Transcription Factor Family AT1G79840 60.082 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo19g0241 START 1.3e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0241 K09338 - qsu:111988083 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0241 19 2779659 2795811 Amo09g0060 09 698346 709504 hybridization