Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0198 ATGGGGAACGTTGTGGAAGCGAGTTTTCGACAAATTGATTACATTATCAATTACGAAGCCCATGTTCAGGAACTAAACCAGCTGGTTGAGAATTTTGAAAACAATGAGCAAACGGTGAAGCGCCTCGTTCGTGTTGCAAAAAATAATGCAGAAGATATTTTACCTGCTGTTGAGCACCGGCTTGACAGGGTGAAAGCAAAGATACAAGAAAATGAAGTGTTTCGTGATTCTAAAACCTTCTTCTCCAAGACAAGGTGGGAGGGTCTTCTCCCTTTCTTCTGGTACCGGCGTCAACTAGGCAGGGGAGCAAAGATATTGGCACTAGAAATCCAGTCACTGATTTCAGAGTATGGCACATCTACAAACATTTCTATTGGAAGAGCTCCAAGCTTTAGCGAAAGCAATCTATCTCACGTCGGCTATATCCAATTCAAATCAAGAAATGATATAGTCCGGGAGATCATAAAGCAATTAAAAGATCCCACGGTGAGAATGGTTGGTCTGCACGGGCCTAGCGGTGTGGGCAAGACTTCTCTCGTCAAACAAATTGGCCAGCAAGCTGAGTTCGAAAGGGTGGCGATGGCAATCGTTAAAAAAGATCCGGACTATCAGAAGGTTCAGCAAGACATAGCCCATTGTTTAGGCTTGACTTTTGAAAATAATGAAGGTGAGAATGGACGAACAACTCGTTTGAGAAAGGTGTTGAAGAAGGAGAATGCCCTCGTGATCCTGGATGACCTCTGGGATGAACTGGATTTGAATAAGATAGGGATTCCACTTGATGATGACGATGTTGCAAGCCACGTGAATGTCAAAGATAACAGTCGCAAACAGGGGGAAAATGAAGATTCTCCTGGTGGCACCATCAAGGGATGCAAAGTTTTGGTTACTTCAAGACACCAAGAAGTGTTGCGCCATAAAATGAATGTTAAAGAAAAATTAACCTTCCGTGTCCAGGAGTTAGACGTTGCAGAAACTCTAAAATTGTTCAAGAAGGTGGTTGGAATGTCTATTGAGAATCCCAAGTTCAAGCCAGAAACTCTTAAGAAGTATTGTGCAGGGTTACCCATGGCAGTAATTATAGTCGGAAAGTCCTTAATGTGTAAAAACAAGTCAGAGTGGGAAGGCGAACTAGAAAGACTCAAAAAGAATGAAGTGCAGAAGTTCATGGAGAATCATGTGAAGATGCGTTACGATAGTATCGAAAGTGAGGAGCTCAAGTCAACTTTCCTAATGTGTGCTCAGATGGGTCATCAATCAATAATTACTGACTTGGTGAAGTACTGCTATGGTTTGGGCATACTTAAAGATGTCTATACACTGAAGGATGCCCGCACGAGCATAACCGAGTCAATCCAGAAGCTGAGAGATTTTGGCTTGTTGGATGGTCATTCCAACGACAATTTTAGTATGCATGATATAATTCGAGATACTGCCCTATCAATAGCGTGCAAGAACGAAAATGTATTTATCCTGAGAAATAAAATACTGGACATCTGGCCTCACAAGGAACAACTTGAGAGGTGCACTGCAATTTATCTACACAAGTGCCATATTGTGGATGGGCTCCCAGAAGTTGTTAATTGTCCTCGGCTTACATTTATCCATATTGACAGTGATGATTCAACCTTGAAAATACCCGACAGATTTTTTGAAGGAATGGAAGAACTCAGAGTTTTAGTATTGTCCGGAATTCATTTGCAGAGTCTGCCGTCTTCAATCAAATGCTTACCAAACCTCAGAATGCTTTGCTTGGAGAAATGCACTCTTGGTGACTTGTCAATTTTAAATCATTTGAGAAAGTTAAGAATTCTTAGCCTTTCAGGATCTAGAATTGAAGATTGGCCGACAATGTTGGAGGGCATAAGCAAGTTGCAGTTGCTAGACATTAGTGATTGCATAATGAGCAACTTGACTCATCCTCTATCTTTATCAAGCTTCACTAGTTTGGAGGAATTGTATATAAGAAGCAGCTTGCCTAAAATGGAGGTGGAAGGACAGACAAATCAGTGTCAAATTTCAATTCTTTCTGAGCTGAAACATTTGCATCAATTGAATACTATAGATGTTTGTATCCCTAGTGCTGAATTTTTGCCACCAGACTTGTTCTTTCACGAGTTAAATGATTACAAGATTGTGATTGGAGACTTTAAGACAATTTCAATCGGGGATTTCAAGATGCCCAATAAATATGAAGCTTCAAGGTCTTTGGCACTGCAGCTAGAATCTGGCCTGGATATTCACTCCCTTAAAGGAGTCAAATTGCTATTCAAAGGAGTGGAGAATTTGCTATTGGGAGAGCTGCATGGAGTTGAAAATGTATTTTATGAGCTGAATCTAAATGGATTTCCAGTTCTGAAACATTTTTCAATCGTAAATAACAAAGACATTGAATTTATTGTGAAAAACTCAATAGAGCTGCTGTCACTACCTCAGGATGCTTTTTCCAATTTAGAGTTTCTCGGCCTCTTTAACCTAAAGAACATCAAGGAGATCATATGTTGCAGTCCTACTACGAATTCTTCATTCTCTAGACTAAAGACAGTCAAAGTGAATATGTGCCCTCAATTGAAAAACATATTCTTCTTTACCATTGTTAAATTTCTTACTAGTCTAGAAACAATTGATATCTCTGAATGTGATTCTTTACAAGCAGTTATTGGTGAGGAAGATGAAAAATCCAACAAGGTTGTACTTCATAAGTTATGTTCCTTGACACTACAAAATTTACCATCATTTGTGAGCTTTTACAACAAAGCCAACATGCCCTTGGTATCTCAATTTATGGAAAAGCAAGCAAGAATTGATGACCCAGGAATTGTCCTGGCAGAGGATGAGAATGAGCAAAGTGCCACAACTTCCTTTTCTCTCTTTCATGAAAACGTTGAAATTCCAAACTTTGGGAGCTTGAAGTTGTTCTCAATCAAGATTCACAGGATATGGAGTGATCAACTTTCAAATGATTGGTTTCAGAACTTGATAAAATTAACTCTGGCAGACTGTTGTAACTTGACATATTTATGCTCATTGTCTGTGGCTCGCAATCTCAATGAACTGAAAAGCATCTCCATAAGTAAGTGTTCACTAATGGAGAAGTTATTCATCATCGAAGGAAATAACAATGAGCATTCAAAGGTTGGTATCTTTCCTAAGTTGGAGGAAATCCAGCTGAGCCAAATGGAGATGTTAAAGGACATATGGCCACGTCAAGACGAAGTCAATGCGGATTCATTTCCTAGACTCATTTCTGTCGGTATTTCTGAATGCAATAAGCTTGACAAGATTTTCCCTGATCACACGAAGTGCTGGTACTTGCATTTGGAAATTTTAAAGGTTCATCGGTGTGAGTCGGTGGAATTCATTTTCGAAAGTAGAATCCTCCGCAACAAAATGACACAAAATCTGCATCTGCATTATTGGAGATTATTGATTTGCATCATCTCCAATATCTGA 3453 0.395 MGNVVEASFRQIDYIINYEAHVQELNQLVENFENNEQTVKRLVRVAKNNAEDILPAVEHRLDRVKAKIQENEVFRDSKTFFSKTRWEGLLPFFWYRRQLGRGAKILALEIQSLISEYGTSTNISIGRAPSFSESNLSHVGYIQFKSRNDIVREIIKQLKDPTVRMVGLHGPSGVGKTSLVKQIGQQAEFERVAMAIVKKDPDYQKVQQDIAHCLGLTFENNEGENGRTTRLRKVLKKENALVILDDLWDELDLNKIGIPLDDDDVASHVNVKDNSRKQGENEDSPGGTIKGCKVLVTSRHQEVLRHKMNVKEKLTFRVQELDVAETLKLFKKVVGMSIENPKFKPETLKKYCAGLPMAVIIVGKSLMCKNKSEWEGELERLKKNEVQKFMENHVKMRYDSIESEELKSTFLMCAQMGHQSIITDLVKYCYGLGILKDVYTLKDARTSITESIQKLRDFGLLDGHSNDNFSMHDIIRDTALSIACKNENVFILRNKILDIWPHKEQLERCTAIYLHKCHIVDGLPEVVNCPRLTFIHIDSDDSTLKIPDRFFEGMEELRVLVLSGIHLQSLPSSIKCLPNLRMLCLEKCTLGDLSILNHLRKLRILSLSGSRIEDWPTMLEGISKLQLLDISDCIMSNLTHPLSLSSFTSLEELYIRSSLPKMEVEGQTNQCQISILSELKHLHQLNTIDVCIPSAEFLPPDLFFHELNDYKIVIGDFKTISIGDFKMPNKYEASRSLALQLESGLDIHSLKGVKLLFKGVENLLLGELHGVENVFYELNLNGFPVLKHFSIVNNKDIEFIVKNSIELLSLPQDAFSNLEFLGLFNLKNIKEIICCSPTTNSSFSRLKTVKVNMCPQLKNIFFFTIVKFLTSLETIDISECDSLQAVIGEEDEKSNKVVLHKLCSLTLQNLPSFVSFYNKANMPLVSQFMEKQARIDDPGIVLAEDENEQSATTSFSLFHENVEIPNFGSLKLFSIKIHRIWSDQLSNDWFQNLIKLTLADCCNLTYLCSLSVARNLNELKSISISKCSLMEKLFIIEGNNNEHSKVGIFPKLEEIQLSQMEMLKDIWPRQDEVNADSFPRLISVGISECNKLDKIFPDHTKCWYLHLEILKVHRCESVEFIFESRILRNKMTQNLHLHYWRLLICIISNI* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0198 1150 MobiDBLite consensus disorder prediction 269 290 - -
Amo19g0198 1150 PANTHER - 9 1131 - -
Amo19g0198 1150 Pfam Leucine rich repeat 530 588 IPR001611 GO:0005515
Amo19g0198 1150 Gene3D Ribonuclease Inhibitor 950 1141 IPR032675 -
Amo19g0198 1150 Gene3D - 139 314 IPR027417 -
Amo19g0198 1150 PANTHER RPP4C4 9 1131 - -
Amo19g0198 1150 SUPERFAMILY L domain-like 471 914 - -
Amo19g0198 1150 Gene3D - 320 402 IPR042197 -
Amo19g0198 1150 Gene3D Ribonuclease Inhibitor 539 922 IPR032675 -
Amo19g0198 1150 CDD AAA 147 198 - -
Amo19g0198 1150 Coils Coil 15 42 - -
Amo19g0198 1150 SUPERFAMILY RNI-like 965 1140 - -
Amo19g0198 1150 Pfam NB-ARC domain 290 398 IPR002182 GO:0043531
Amo19g0198 1150 Pfam NB-ARC domain 149 269 IPR002182 GO:0043531
Amo19g0198 1150 SMART AAA_5 162 324 IPR003593 -
Amo19g0198 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 413 IPR027417 -
Amo19g0198 1150 PRINTS Disease resistance protein signature 165 180 - -
Amo19g0198 1150 PRINTS Disease resistance protein signature 352 366 - -
Amo19g0198 1150 PRINTS Disease resistance protein signature 234 248 - -
Amo19g0198 1150 PRINTS Disease resistance protein signature 867 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0198 Amo-Chr19 2248753 2252388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0198 149 455 WRKY Transcription Factor Family AT5G45050 26.300 6.79e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0198 - - ahf:112776964 2234.91